Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_F16
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 248 3e-66
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 248 3e-66
09_06_0103 + 20873310-20873382,20873530-20873735 29 4.9
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.6
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 8.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 248 bits (608), Expect = 3e-66
Identities = 118/200 (59%), Positives = 145/200 (72%), Gaps = 1/200 (0%)
Frame = +1
Query: 127 STRKMSPKCLLQPPI-LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAI 303
S R+ + +L + LG K ME YVYKRR DG ++INL +TWEKL LAAR +VAI
Sbjct: 13 SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72
Query: 304 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLXPA 483
ENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ P
Sbjct: 73 ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132
Query: 484 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNXKSSHSIGLMWWLLAREVLRLXGV 663
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++ G
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
Query: 664 LPRDQRWDVVVDLXFYRDPE 723
+ +WDV+VDL FYRDPE
Sbjct: 193 ILPGHKWDVMVDLFFYRDPE 212
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 120 LALNEEDVTKMLAATTHLGAENVNFQ 197
L+ E+D+ MLAA HLG +N +FQ
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQ 37
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 248 bits (608), Expect = 3e-66
Identities = 115/184 (62%), Positives = 140/184 (76%)
Frame = +1
Query: 172 LGQKMLTSXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQ 351
LG K ME YVYKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQ
Sbjct: 29 LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88
Query: 352 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLXPAQDHQPITEASYVNIPV 531
RAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ P DHQPI E++ NIP
Sbjct: 89 RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148
Query: 532 IALCNTDSPLRFVDIAIPCNXKSSHSIGLMWWLLAREVLRLXGVLPRDQRWDVVVDLXFY 711
IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++ G + +WDV+VDL FY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208
Query: 712 RDPE 723
RDPE
Sbjct: 209 RDPE 212
Score = 34.7 bits (76), Expect = 0.099
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 87 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQ 197
++A G L+ E+DV MLAA HLG +N +FQ
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQ 37
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 366 VCRAHRCYAYC---GTFHXRCFY*PDPSCIP*TSSLDCI 473
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 187 TFSAPRWVVAASILVTSSSLRASTSNP 107
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 370 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 215
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -3
Query: 665 STPXSLSTSRANNHHIKPIEWEDLXLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WS 486
S+ + ST+ +N+ + + + A S + S + G+ + S G WS
Sbjct: 386 SSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIGVASNAGSSSGSWS 445
Query: 485 CAGSNTIKRRGSRNAAW 435
AGSNT G+ ++ W
Sbjct: 446 NAGSNTGTLSGAGSSNW 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,194,865
Number of Sequences: 37544
Number of extensions: 485120
Number of successful extensions: 1082
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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