Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F15
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 462 PPPPXXXXXXXPPXXXXXXPXPXXXXGGPPP 554
           PPPP       P       P P    GGPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763



 Score = 29.1 bits (62), Expect = 0.92
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 336 PPPPXXXXPXXXPPXXFXGKXFFXXXKKXPPPXXPXGXXXGXPPPP 473
           PPPP    P   P                PPP  P     G PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 336 PPPPXXXXPXXXPPXXFXGKXFFXXXKKXPPPXXPXGXXXGXPPPP 473
           PPPP         P               PPP  P G     PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 424 PPPXXPXXXXXGXPPPP 474
           PPP  P     G PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 335 PPPPXXXPPXXXPPP 379
           PPPP   PP   PPP
Sbjct: 13  PPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 361 PXXPPPXXXXXXXFXXXKKXXPPPXXPXXXXXGXPP 468
           P  PP            KK  PPP  P     G PP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,861
Number of Sequences: 5004
Number of extensions: 25823
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)