Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F14
         (996 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 16/37 (43%), Positives = 16/37 (43%)
 Frame = -2

Query: 773 PPPPXGGGGGXXXXXXPPPXPXXXXXXXGGXPPPPPP 663
           PP P  GG        PPP P        G PPPPPP
Sbjct: 753 PPAPIMGG--------PPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = -1

Query: 771 PPPPXGGGGXXXXXXXPPXPPXXXXXXGGGXPPPPPXXXXXXXPXP 634
           PPPP             P PP      G   PPPPP       P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = -2

Query: 773 PPPPXGGGGGXXXXXXPPPXPXXXXXXXGGXPPPPPP 663
           PPPP            P P P        G PPPPPP
Sbjct: 733 PPPPPAV---IVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 725 PPPXPXXXXXXXGGXPPPPPP 663
           PPP P          PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 725 PPPXPXXXXXXXGGXPPPPPP 663
           PPP P          PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 689 GGXPPPPPP 663
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 21.8 bits (44), Expect(2) = 4.7
 Identities = 9/29 (31%), Positives = 10/29 (34%)
 Frame = -2

Query: 680 PPPPPPXXXXXXXPXQXKXXXFXXXXKKK 594
           PPPPPP       P       +    K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = -3

Query: 766 PPXGGGGGXXXXXXPPXXPXXXXXXXGGXPPPPPXXXXXXPPP 638
           PP G G        PP  P       G  P PP       PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAA--GSIPLPPQGRSAPPPPP 365



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -1

Query: 765 PPXGGGGXXXXXXXPPXPPXXXXXXGGGXPPPPPXXXXXXXPXP 634
           PP G G        PP PP       G  P PP        P P
Sbjct: 325 PPIGNGSSNSSL--PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +1

Query: 712 GXGGGXXXXXXPPPPPXGGGGXXXXXXXXXXXXPPPP 822
           G G        PPPPP                 PPPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,627
Number of Sequences: 5004
Number of extensions: 42893
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)