Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_F13
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     29   0.80 
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   7.5  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   9.9  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  LNIFVFNLXASSRAYKMFRLFLYLNILGAFLVTGL 148
           LNI  FNL  S  ++    L  YLN+LG  L+T +
Sbjct: 56  LNILYFNLSKSMVSFAQVPLEEYLNLLGHSLLTSI 90


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 329 RDMLRIASPYVNRNAPQQVLXDDTYDGPL 415
           +D+  IAS Y ++  P  +  DD + GPL
Sbjct: 263 KDLQTIASLYDDQQLPSWITKDDLFRGPL 291


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 349 RDSEHVSQYRQTPLDGIRQNRTIVIHYLNFKYITIKFVVR 230
           R  EH+    QT L+ +  N+   ++  NF++I   F  R
Sbjct: 190 RICEHIENGSQTVLEILLMNQNSFLNNFNFEHIKADFAFR 229


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 471 MIESYNLTIAADSTLRSSSIWGILR 545
           +IES NL  AAD T+  S I G +R
Sbjct: 174 VIESVNLIAAADGTVIQSEILGKVR 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,615
Number of Sequences: 5004
Number of extensions: 54241
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)