Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_F13
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 50 3e-06
07_03_1000 - 23220878-23221821,23222164-23223001 46 3e-05
03_02_0187 - 6248226-6249226,6249296-6250148 43 3e-04
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 33 0.36
03_05_0799 + 27809301-27811550 31 1.1
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 31 1.5
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 30 1.9
01_06_0714 + 31413195-31413221,31414238-31414786 29 3.4
04_03_0980 + 21406822-21409496,21410322-21410376 29 5.9
06_03_0662 - 23229957-23230204,23231021-23231160,23231257-232313... 28 7.8
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 617 VHDFPRYPHRGLLXDTSRHYISMSXXXXXXXXXXXXXXXXFHWHIVDXXXXP 772
+ D PR+P+RGLL DTSRHY+ + HWHIVD P
Sbjct: 166 ITDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFP 217
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +3
Query: 438 HHPXEEYPHFGMIESYNLTIAADST-----LRSSSIWGILRGLESWTHL 569
H P +E +FG+ ESYNL++ A + + + +++G L LE+++ L
Sbjct: 100 HLPGDEL-NFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQL 147
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/67 (34%), Positives = 26/67 (38%)
Frame = +2
Query: 617 VHDFPRYPHRGLLXDTSRHYISMSXXXXXXXXXXXXXXXXFHWHIVDXXXXPYXXXXXXD 796
V D P YPHRGL+ DT R Y ++ FHWHI D P
Sbjct: 181 VEDRPLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHITDSQSFPLELPSEPA 240
Query: 797 LXPLGXY 817
L G Y
Sbjct: 241 LAEKGSY 247
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +3
Query: 468 GMIESYNLTI---AADSTLRSSSIWGILRGLESWTHL 569
G+ ESY L I A +T+ +++ WG +RGLE+++ L
Sbjct: 127 GVDESYALEILPAGAAATVTAATAWGAMRGLETFSQL 163
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +2
Query: 614 EVHDFPRYPHRGLLXDTSRHYISMSXXXXXXXXXXXXXXXXFHWHIVDXXXXPYXXXXXX 793
E+ D P + HRG+L DT+R++ + FHWHI D P
Sbjct: 185 EISDRPHFTHRGILLDTARNFYPVRDILHTLRAMAFNKLNVFHWHITDAQSFPIVLPTVP 244
Query: 794 DLXPLGXY 817
+L G Y
Sbjct: 245 NLANSGSY 252
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +3
Query: 477 ESYNLTIAADS---TLRSSSIWGILRGLESWTHL 569
ESY L++ DS + +++ WG +RGLE+++ L
Sbjct: 132 ESYTLSVLPDSGSADISAATPWGAIRGLETFSQL 165
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 596 IAH*QGEVHDFPRYPHRGLLXDTSRHYI 679
+ H + D PR+ RGLL DTSRH++
Sbjct: 172 VRHAPWYIEDEPRFAFRGLLLDTSRHFL 199
>03_05_0799 + 27809301-27811550
Length = 749
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +2
Query: 266 KVMDHDCPILSNAVQRSLAVLRDMLRIASPYVNR 367
KV++H P++ A SLAVLR +L + S VNR
Sbjct: 90 KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNR 123
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 659 DTSRHYISMSXXXXXXXXXXXXXXXXFHWHIVDXXXXP 772
DTSRHY+ ++ HWHIVD P
Sbjct: 173 DTSRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFP 210
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 227 IPYYKFDSDVLEIKVMDHDCPILSNAVQRSLAVLRD-MLRIASPYVNRNAPQQVLXDDTY 403
IPYY FD V +++ + SN V+R ++ LRD + R P + P +V+ +
Sbjct: 143 IPYYSFDQFVRKVEKVG-----ASNRVRRCVSELRDRVARGGDPTLLHEPPVEVIPEGEP 197
Query: 404 DG 409
DG
Sbjct: 198 DG 199
>01_06_0714 + 31413195-31413221,31414238-31414786
Length = 191
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 265 NFKYITIKFVVRNFYRLHLRSWPNCTF 185
NF ++ + +R RL +R WPNC F
Sbjct: 76 NFAWLLLHNRLRTADRLQIRQWPNCYF 102
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 232 RNFYRLHLRSWPNCTFRCWIFGSRFHDMQTGH 137
+N LHLRS P F ++ S F D++T H
Sbjct: 734 QNLQHLHLRSCPRLQFVLPVWASSFPDLKTLH 765
>06_03_0662 -
23229957-23230204,23231021-23231160,23231257-23231394,
23231501-23231676,23232071-23232152,23233531-23233666,
23237028-23237145
Length = 345
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 462 HFGMIESYNL--TIAADSTLRSSSIWGILRGLESWTHLF 572
HFG+++SY++ T+ + S S I+ G + W H+F
Sbjct: 217 HFGLVKSYDMPCTVESASLEPKSGSKFIVGGEDMWVHVF 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,309
Number of Sequences: 37544
Number of extensions: 358765
Number of successful extensions: 794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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