Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_F10
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 119 4e-27
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 112 3e-25
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 107 2e-23
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 94 2e-19
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 93 3e-19
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 78 1e-14
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 30 2.8
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 3.7
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 29 6.4
04_03_0780 - 19550106-19550809,19550982-19551003 29 6.4
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 119 bits (286), Expect = 4e-27
Identities = 62/138 (44%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Frame = +2
Query: 227 FSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAK 406
FS+ V ++GATI S+ +PD G +DVVLG+D + YVN T Y G +GR ANRI A+
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLGYDTVAEYVN-GTAYFGGLIGRVANRIANAR 104
Query: 407 FSIDGTTYQLANNIGKDHLHGGIXGFNKANWN-----STVDGTXVIFSYLSKDGEXGYPG 571
F++DG TY+L N G + LHGG GF+K W + D + Y S DGE G+PG
Sbjct: 105 FTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEHVAGGDSPRITLYYHSFDGEQGFPG 164
Query: 572 DLITNITYEVTEDXALXV 625
DL +TYE+ L V
Sbjct: 165 DLDVFVTYELPRPYVLAV 182
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 112 bits (270), Expect = 3e-25
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Frame = +2
Query: 230 SVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRN----------TPYLGTTVGR 379
+ + ++GATI S+ VPD +G +DVVLGFD L+ Y+ +PY G VGR
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMEYVGTGKGGQKGISPYFGCIVGR 74
Query: 380 CANRIGGAKFSIDGTTYQLANNIGKDHLHGGIXGFNKANWN---STVDGTXVIFSYLSKD 550
ANRI KF+++G Y LA N G + LHGG+ GF+K W+ + + F Y SKD
Sbjct: 75 VANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKD 134
Query: 551 GEXGYPGDLITNITYEVTEDXALXVD 628
GE GYPGD+ TY + + L +D
Sbjct: 135 GEEGYPGDVTVRATYSLPDSTTLRLD 160
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 107 bits (256), Expect = 2e-23
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Frame = +2
Query: 188 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGT 367
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLG D + YVN +T Y G
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVN-DTNYFGP 87
Query: 368 TVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGIXGFNKANWN-----STVDGTXVIF 532
GR RI +F +DG Y N G++ +HGG GF+K W D +
Sbjct: 88 VTGRVGQRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKVIWTVKEYVGGGDSPYITL 147
Query: 533 SYLSKDGEXGYPGDLITNITYEVTEDXAL 619
Y S DGE G+PGDL +TY+++ L
Sbjct: 148 YYRSFDGEQGFPGDLDAYVTYQLSSPYVL 176
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 93.9 bits (223), Expect = 2e-19
Identities = 64/179 (35%), Positives = 84/179 (46%), Gaps = 26/179 (14%)
Frame = +2
Query: 167 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNR 346
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG+D + YVN
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEYVNS 84
Query: 347 NTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG------------------- 469
+T Y G VGR ANRI A+F +DG Y L N GK+ LHG
Sbjct: 85 ST-YFGALVGRVANRIAKARFVLDGKAYHLYPNDGKNTLHGILEKFPEVQEIHGAWFIST 143
Query: 470 --GIXGFNKANWN-----STVDGTXVIFSYLSKDGEXGYPGDLITNITYEVTEDXALXV 625
G GF+ W D + Y S DGE G+PG L +TY+++ L V
Sbjct: 144 NSGHRGFSNVTWTVKEHVGGGDAPYITLYYHSFDGEQGFPGALDVYVTYQLSGPYVLSV 202
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 93.1 bits (221), Expect = 3e-19
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Frame = +2
Query: 290 GITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG 469
G DVVLG+ ++ YVN +T Y G VGR ANRI G +F++ G + N GK+ LHG
Sbjct: 5 GHIDDVVLGYKDIGSYVN-DTTYFGALVGRVANRIAGGRFTVKGHAFHTYKNDGKNTLHG 63
Query: 470 GIXGFNKANWN----STVDGTXVIFSYLSKDGEXGYPGDLITNITYEVTEDXALXV 625
G GFN+ W+ +T + F Y S DGE G+PG L +TY++ D + V
Sbjct: 64 GHRGFNQVFWSVRERATGHFPYITFYYRSYDGEQGFPGALDVLVTYKIDGDYSFSV 119
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 77.8 bits (183), Expect = 1e-14
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Frame = +2
Query: 332 GYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGIXGFNKANWNSTV 511
G N +PY G VGR ANRI KF+++ Y LA N + LHGG GF+K W
Sbjct: 198 GVPNGTSPYFGCIVGRVANRIKDGKFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAE 257
Query: 512 ----DGTXVIFSYLSKDGEXGYPGDLITNITYEVTEDXALXVD 628
+ + F Y SKDGE G+PGD+ Y + L ++
Sbjct: 258 YVKGENPSITFKYYSKDGEEGFPGDVSVTARYSILASTTLKLE 300
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 239 VISYGATIQSIQVPDKYGITSDVVLGFDELDGY 337
+ + GAT+ S+ VPD G+ DVVLGFD LD Y
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLGFDSLDPY 154
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 673 HSYFNLAGXXTGVPXIYXHXFVIXADXITXTDSGSXPXG 789
H+Y+NLAG +G + H I IT D S P G
Sbjct: 317 HTYWNLAGHNSG--DVLAHTVQILGSQITPVDETSIPTG 353
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 372 TVVPKY-GVFLFTYPSSSSKPRTTSLVIPYLSGT*IDCMVAPY--EMTDTEKPSDALHVN 202
TV+PK V YP++ S T S+++P +S + C+ + E DTE+ D+
Sbjct: 76 TVLPKSTSVRGQDYPTADSVLPTESIIVPEISNAGLKCVADMFSDEDKDTEQDLDSPTEG 135
Query: 201 FETVS 187
F ++S
Sbjct: 136 FSSIS 140
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 137 IINMVTLNVEDFGQHHGETVSKFTWR 214
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 423 VPSMLNFAPPILLAQRPTVVPKYGVFLFTYPSSSSK---PRTTSLVIPYLSGT 274
+ S ++F P LL T +G LF PS+ K PR SL++ +LS +
Sbjct: 26 IQSPMDFGPLNLLPTTTTASSDFGRILFHSPSAVLKPQAPRDISLLLSFLSAS 78
>04_03_0780 - 19550106-19550809,19550982-19551003
Length = 241
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 272 QVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANR 391
+V DK G+T +LGFD G + TT+GR + R
Sbjct: 66 KVLDKRGLTMWNLLGFDTKAGIATDRPLIVRTTIGRASKR 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,975,573
Number of Sequences: 37544
Number of extensions: 374081
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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