Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_E22
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 72 5e-13
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 70 2e-12
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 62 5e-10
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 62 5e-10
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 62 5e-10
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 62 5e-10
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 56 3e-08
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 72.1 bits (169), Expect = 5e-13
Identities = 34/69 (49%), Positives = 45/69 (65%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGR 572
LGN+ + + I + D SLSG + IIGR+VV+HEK DD G+ S+ TGNAG R
Sbjct: 108 LGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
Query: 573 VACGVIGIL 599
+ACG IGI+
Sbjct: 168 LACGTIGIV 176
Score = 60.1 bits (139), Expect = 2e-09
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGSSE 366
++GL G++GFH+HEKGD GCLS G H+NP HG+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGR 572
LGN+ + + I + D SLSG + IIGR+VV+HEK DD G+ S+ TGNAG R
Sbjct: 108 LGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
Query: 573 VACGVIG 593
+ACG IG
Sbjct: 168 LACGTIG 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGSSE 366
++GL G++GFH+HEKGD GCLS G H+NP HG+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 70.1 bits (164), Expect = 2e-12
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGR 572
LGN+ + + I + D SLSG + IIGR+VV+HEK DD G+ S+ TGNAG R
Sbjct: 108 LGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
Query: 573 VACGVIG 593
+ACG IG
Sbjct: 168 LACGTIG 174
Score = 60.1 bits (139), Expect = 2e-09
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGSSE 366
++GL G++GFH+HEKGD GCLS G H+NP HG+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGNA 563
LGNV + ++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNA
Sbjct: 84 LGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNA 143
Query: 564 GGRVACGVIGI 596
G R ACGVI +
Sbjct: 144 GARAACGVIAL 154
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHG 357
I GL PG +GFHVH+ GD + GC+S G HFNP K HG
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGNA 563
LGNV + ++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNA
Sbjct: 84 LGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNA 143
Query: 564 GGRVACGVIGI 596
G R ACGVI +
Sbjct: 144 GARAACGVIAL 154
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHG 357
I GL PG +GFHVH+ GD + GC+S G HFNP K HG
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGNA 563
LGNV + ++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNA
Sbjct: 84 LGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNA 143
Query: 564 GGRVACGVIGI 596
G R ACGVI +
Sbjct: 144 GARAACGVIAL 154
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHG 357
I GL PG +GFHVH+ GD + GC+S G HFNP K HG
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 72
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 62.1 bits (144), Expect = 5e-10
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGNA 563
LGNV + ++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNA
Sbjct: 106 LGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNA 165
Query: 564 GGRVACGVIGI 596
G R ACGVI +
Sbjct: 166 GARAACGVIAL 176
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHG 357
I GL PG +GFHVH+ GD + GC+S G HFNP K HG
Sbjct: 57 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHG 94
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 56.4 bits (130), Expect = 3e-08
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +3
Query: 393 LGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK---SDHPDSRKTGNA 563
LGNV + ++I D +SL G + +IGR++V+H DD G+ +S KTGNA
Sbjct: 104 LGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNA 163
Query: 564 GGRVACGVIGI 596
G R ACGVI +
Sbjct: 164 GARAACGVIAL 174
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 232 FRXGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGSSE 366
F I GL PG +GFH+H+ GD + GC S G HFNP +HG +
Sbjct: 51 FEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRD 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,833,115
Number of Sequences: 27780
Number of extensions: 314421
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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