Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E18
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   150   2e-37
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   150   2e-37
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.043
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    27   2.8  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  150 bits (364), Expect = 2e-37
 Identities = 68/113 (60%), Positives = 87/113 (76%)
 Frame = +2

Query: 59  LSSKMADQPEKAFQXQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 238
           +++++  Q E+AFQ Q  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 239 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 397
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSP 110



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +3

Query: 420 GDIVTIGECRPLSKTVRFNVLKV 488
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  150 bits (364), Expect = 2e-37
 Identities = 68/113 (60%), Positives = 87/113 (76%)
 Frame = +2

Query: 59  LSSKMADQPEKAFQXQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPF 238
           +++++  Q E+AFQ Q  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF
Sbjct: 1   MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57

Query: 239 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSP 397
            G VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP
Sbjct: 58  VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSP 110



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +3

Query: 420 GDIVTIGECRPLSKTVRFNVLKV 488
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 417 IGDIVTIGECRPLSKTVRFNVLKV 488
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 363 NGTGTCPYICRLGFRDVEIGDIVTI 437
           NG GTC +IC LG+    +G  V I
Sbjct: 139 NGPGTCVFICLLGYLAKFLGKNVKI 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,220
Number of Sequences: 5004
Number of extensions: 40050
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)