Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E17
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    31   0.29 
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    29   0.88 
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    27   4.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   4.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   8.2  

>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 272  KQKTKKKAD--FNPKFEFISSFEEY-NKNTWDDLHKYVRRNVKRTLDEKIEKRRAHVKVH 442
            K+KTK++ +   N K + I   EE   KN+ ++ H  +   +K+ ++EK+++  A+  V 
Sbjct: 1603 KEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKLKENSANFDVK 1662

Query: 443  GNADSVETD 469
                  ET+
Sbjct: 1663 LKKVVAETE 1671


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 260 YQPSKQKTKKKADFNPKFEFISSFEEYNKNTWDDLHKYVR 379
           ++P K KTK K D     EF  + + Y K  + ++ K+V+
Sbjct: 257 FEPPKPKTKHKLDITSVSEF-EALQAYEKEKFQEMIKHVK 295


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 287 KKADFNPKFEFISSFEEYNKNTWDD 361
           K+   N KF FIS+   Y K  WDD
Sbjct: 269 KELLMNAKFYFISALGVYQKIGWDD 293


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 186 RVPFYKFHCCLIQSAQIISHKLHKYLVEDTF*AHSFYTKTF 64
           ++P+++  C L+++  IIS  + + L+ D F   S +   F
Sbjct: 528 KIPYHELFCALLKNPDIISSSVKQSLLLDGFFRWSQHCSNF 568


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/40 (22%), Positives = 24/40 (60%)
 Frame = +2

Query: 326 SFEEYNKNTWDDLHKYVRRNVKRTLDEKIEKRRAHVKVHG 445
           +FE+ ++  W ++HK  +  +++   +  E + + +KV+G
Sbjct: 605 AFEQVDRE-WYEIHKEAKSEIEKDSSKPTEDQESKLKVYG 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,904
Number of Sequences: 5004
Number of extensions: 45032
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)