Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E17
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0347 + 22555087-22555943,22556638-22558783                       29   6.6  
02_05_0507 - 29617998-29618099,29618299-29618386,29618470-296185...    28   8.7  

>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 399 WMRRLRNVERMSKSMAMLTLLRLIQMSKI 485
           W+ RL N+E+++ SM  LT   L+ +S++
Sbjct: 832 WIDRLHNLEKLTLSMTSLTTDTLVTLSRL 860


>02_05_0507 -
           29617998-29618099,29618299-29618386,29618470-29618567,
           29618680-29618766,29618887-29619042,29619228-29619334,
           29619621-29619706,29619796-29619870,29619987-29620204
          Length = 338

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 417 FSIFSSNVLFTLRRTYLCKSSQVFLLYSSKDDMNSNFGLKSAFFFVFCFDGWY 259
           F + +S  LF  R   +  ++Q+F +++  +DM S  G K A F   C  G++
Sbjct: 57  FLLLASLFLFPRRVAAMVLATQLFFMFAPVNDM-SRLGRKIARFISKCVIGYF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,982,894
Number of Sequences: 37544
Number of extensions: 268974
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)