Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E10
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.072
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.22 
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    29   1.2  
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    29   1.2  
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    29   1.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = +2

Query: 689 PPPPPXXXPPXXXXXXXXXXPPXPPXXXXXPPPPXXXXPXXPXXGGXPXHXXXXPPXPP 865
           PPPPP    P          PP P      PPPP    P      G P      PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP----PPGVAGAGPP----PPPPPPP 783



 Score = 32.3 bits (70), Expect = 0.096
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 689 PPPPPXXXPPXXXXXXXXXXPPXPPXXXXXPPPPXXXXPXXPXXGG 826
           P P P   PP          PP PP      PPP    P     GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
 Frame = +1

Query: 685 PXPPPPPXXXPXXXXXXXXXXPPPP--XXKXGXXPPXXXXXXXPPPXGXXP 831
           P PPPP    P          PP P         PP       PPP    P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 685 PXPPPPPXXXPXXXXXXXXXXPPPPXXKXGXXPPXXXXXXXPPP 816
           P P P P   P          PPPP       PP       PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +2

Query: 689  PPPPPXXXPPXXXXXXXXXXPPXPPXXXXXPPPPXXXXPXXPXXG 823
            PPPPP   PP          PP  P     PP P    P  P  G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP----PPPLPASSAPSVPNPG 1747


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 229 SGXXTXXGSXIXXCGGFDXRXXXNFKKGAXKXVKDXSK 342
           SG  T  G  I  CGG D R    F+K A +  K   K
Sbjct: 18  SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFK 55


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 229 SGXXTXXGSXIXXCGGFDXRXXXNFKKGAXKXVKDXSK 342
           SG  T  G  I  CGG D R    F+K A +  K   K
Sbjct: 18  SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFK 55


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 229 SGXXTXXGSXIXXCGGFDXRXXXNFKKGAXKXVKDXSK 342
           SG  T  G  I  CGG D R    F+K A +  K   K
Sbjct: 18  SGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFK 55


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/73 (27%), Positives = 20/73 (27%)
 Frame = -2

Query: 813 GXXGXXXXGGGGXXXFXGGXGGXXXXXXXXXXGGXXXGGGGGXXXFFXXPXXXXXXXPXX 634
           G  G    G GG     GG GG           G   G GGG   F   P          
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF 247

Query: 633 GGXXXXXXXXGGG 595
           GG         GG
Sbjct: 248 GGGLGGFGGGPGG 260


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = +2

Query: 689 PPPPPXXXPPXXXXXXXXXXPPXPPXXXXXPPPPXXXXPXXPXXGGXPXHXXXXPPXPP 865
           P P P   PP          PP  P      PP     P  P     P      PP PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL---PAGMPAAPPLPP 471



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/85 (25%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
 Frame = +1

Query: 631 PPXGGXXPXXXGXXKKXXPXPPPPP-----XXXPXXXXXXXXXXPPPPXXKXG------X 777
           PP             K  P PPPPP        P          PPPP            
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352

Query: 778 XPPXXXXXXXPPPXGXXPXTXXXXP 852
            PP       PPP    P T    P
Sbjct: 353 LPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/58 (27%), Positives = 16/58 (27%)
 Frame = +2

Query: 689 PPPPPXXXPPXXXXXXXXXXPPXPPXXXXXPPPPXXXXPXXPXXGGXPXHXXXXPPXP 862
           PP  P   PP          PP PP     PP P       P     P       P P
Sbjct: 428 PPSLPPSAPPSLPMGAPAA-PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/72 (23%), Positives = 17/72 (23%)
 Frame = +2

Query: 599  PPXXXXXXXXPPXXGXXXXXXXGXKKXXXXPPPPPXXXPPXXXXXXXXXXPPXPPXXXXX 778
            PP        PP            K     PP PP    P          P  PP     
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218

Query: 779  PPPPXXXXPXXP 814
             P P    P  P
Sbjct: 1219 VPTPSAGLPPVP 1230


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 685 PXPPPPPXXXPXXXXXXXXXXPPPP 759
           P  PPPP   P          PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 694  PPPPXXXPXXXXXXXXXXPPPPXXKXGXXPPXXXXXXXPP 813
            PPPP              PPPP       PP       PP
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,013,254
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)