Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E09
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    27   4.7  
SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    27   4.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   4.7  

>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 222 SCLGNSSLPSVEKHTVLNETPIGNTITDFTSYYYPRF 112
           S +   +LP+V + TV+  T    T T +TSYY P +
Sbjct: 487 SKMSGFTLPTVNR-TVMPSTSATATTTVYTSYYSPSY 522


>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +2

Query: 224 KTRKMSQEKPIFDYHEES--QTEKLARKSKESPFMVIGITGLXXXXXXXXXXXXXXXXMS 397
           K  + + E P F   EES  ++EKL      +PF+ +G                    + 
Sbjct: 7   KKSEENLELPTFPASEESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLM 66

Query: 398 TSVFLMQFRVIAQGTVVGALTAGMMY 475
            + F M++RV++QG  + AL   +++
Sbjct: 67  ANKF-MRYRVMSQGFTLAALAFSVLF 91


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 647 MCPVKTTTLSSYLKHF 600
           MCP+  TTLS +++HF
Sbjct: 460 MCPLCCTTLSKFVRHF 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,776
Number of Sequences: 5004
Number of extensions: 54196
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)