Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E09
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    30   1.9  
Z71263-4|CAA95822.1|  110|Caenorhabditis elegans Hypothetical pr...    29   3.3  
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.        29   5.8  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    29   5.8  
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical...    29   5.8  

>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 681 FHRTGEIFNT-NIRSL*LSHCF 743
           F R GEI N  NIR++ LSHCF
Sbjct: 218 FDRNGEILNNMNIRNIYLSHCF 239


>Z71263-4|CAA95822.1|  110|Caenorhabditis elegans Hypothetical
           protein F52A8.1 protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 589 VHDKKCFRYEESVVVLTGHIIL*SVCVVLSIFIELVR 699
           + D+ CFR ++ V VL   ++  +VC +LSI I  VR
Sbjct: 72  IADQCCFRLQDWVTVL---LLFLAVCTILSIIINCVR 105


>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 185 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 307
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11b protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 185 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 307
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
           protein Y71G12B.11a protein.
          Length = 2553

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 185 FSTEGRLLLPRHDKTRKMSQEKPIFDYHEESQTEKLARKSK 307
           F  +GR +LP+     K +++K +  Y E S T +L  KSK
Sbjct: 285 FHLDGRDVLPKEYAKNKENEKKVVAMYKELSGTSELDAKSK 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,125
Number of Sequences: 27780
Number of extensions: 304935
Number of successful extensions: 686
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)