Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E06
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    28   2.2  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    27   3.9  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 144 PKPSTIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGK-DYDIKMASFMDKNY 314
           P    +KTK+ D + +  Q K+   FQ+++    +   Y+ G+  Y I+  SF++ ++
Sbjct: 780 PFKKDLKTKSFDCIVIASQPKLSLAFQNLTSGKFNFAEYETGELVYVIENTSFVEASH 837


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -3

Query: 282 YHSLCQFYNIHHQ--CLVGSHLG 220
           Y++ C FYNI H   C  G  LG
Sbjct: 36  YYNFCPFYNIQHNYTCQTGDPLG 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,582
Number of Sequences: 5004
Number of extensions: 34737
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)