Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E06
         (947 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding prote...    32   2.7  
AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.         32   2.7  
AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.        32   2.7  
BC010993-1|AAH10993.2|  337|Homo sapiens calcium binding protein...    31   8.1  
AL138875-4|CAI10893.1|  337|Homo sapiens calcium binding protein...    31   8.1  
AL138875-3|CAI10892.1|  280|Homo sapiens calcium binding protein...    31   8.1  
AL136218-3|CAI10816.1|  337|Homo sapiens calcium binding protein...    31   8.1  
AL136218-1|CAI10814.1|  280|Homo sapiens calcium binding protein...    31   8.1  
AK022639-1|BAB14147.1|  289|Homo sapiens protein ( Homo sapiens ...    31   8.1  

>BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding
           protein-like protein.
          Length = 481

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 73  SAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 228
           S GN EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 101 SRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


>AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.
          Length = 318

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 73  SAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 228
           S GN EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 27  SRGN-EVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQV 77


>AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.
          Length = 481

 Score = 32.3 bits (70), Expect = 2.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 73  SAGNHEVCLNSWLGL*PSRSAVQYQSRAP*RQKMWMPYLLKSKRKFCPSSKM 228
           S GN EVC   WLGL  +R+++   SR P + K ++    + KR + P  ++
Sbjct: 101 SRGN-EVCRKIWLGLFDARTSLVPNSRDPQKVKEFLQEKYEKKRWYVPPDQV 151


>BC010993-1|AAH10993.2|  337|Homo sapiens calcium binding protein
           39-like protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 286 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 334


>AL138875-4|CAI10893.1|  337|Homo sapiens calcium binding protein
           39-like protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 286 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 334


>AL138875-3|CAI10892.1|  280|Homo sapiens calcium binding protein
           39-like protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 229 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 277


>AL136218-3|CAI10816.1|  337|Homo sapiens calcium binding protein
           39-like protein.
          Length = 337

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 286 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 334


>AL136218-1|CAI10814.1|  280|Homo sapiens calcium binding protein
           39-like protein.
          Length = 280

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 229 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 277


>AK022639-1|BAB14147.1|  289|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12577 fis, clone NT2RM4001047, highly similar to
           MO25 PROTEIN. ).
          Length = 289

 Score = 30.7 bits (66), Expect = 8.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 162 KTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIKMASFMDK 308
           KT+ +  + ++ Q K++ F     +  TDDE +   K+Y IK    + K
Sbjct: 238 KTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKK 286


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,403,754
Number of Sequences: 237096
Number of extensions: 1233708
Number of successful extensions: 1969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12492094950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)