Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E04
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    28   2.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   2.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   4.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.2  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 444 LSILYSGLCADEVKIVDGPSKYPSCT-CTREMKPVCGSDGITYNNDCLLNCATINDSRLG 620
           LS   SG CA    I+D  S+Y  C  C +   P  G   +   +D LLN  +   S+ G
Sbjct: 158 LSASDSGACAFARSILDWISRYRFCPGCGKRNIPTMGGTKLVC-SDVLLNDDSNCPSKKG 216

Query: 621 IEYY 632
           I  Y
Sbjct: 217 INNY 220


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -3

Query: 320  RAGSLISDP*TGIISGGTVEQALVVVCFPISAAHWSLVSVART-AWWIGKCCNHL 159
            RA + + +   G+++G +  + L+V C  +SAA   LV+ +R  A +  K  +HL
Sbjct: 959  RATTTLIETADGVVNGTSSFEHLIVACNGVSAATAQLVAASRVKANFASKVQDHL 1013


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -1

Query: 628 YSMPSLESLIVAQFKRQSLLYVIPSLPQTGFISRV 524
           YS+ SL  + V+Q  + S+++++P L    ++ ++
Sbjct: 228 YSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEKI 262


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 201  YRNQRPVCGTDGKTYNNECLLDC 269
            Y N  P C TD +  +  C +DC
Sbjct: 955  YANDEPPCPTDEEIQHTLCTIDC 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,588
Number of Sequences: 5004
Number of extensions: 58406
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)