Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E04
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.008
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 31.9 bits (69), Expect = 0.008
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 198 CYRNQRPVCGTDGKTYNNECLL 263
           C R  RPVC ++GK Y N C L
Sbjct: 110 CPRRHRPVCASNGKIYANHCEL 131



 Score = 29.1 bits (62), Expect = 0.057
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 522 CTREMKPVCGSDGITYNNDCLLNCA 596
           C R  +PVC S+G  Y N C L+ A
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRA 134


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 287 GIISGGTVEQALVVVCFPISAAHWSL 210
           GI SG +   +LVVV   IS   W L
Sbjct: 53  GIASGLSAMLSLVVVTVAISTGEWLL 78


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -1

Query: 571 LYVIPSLPQTGFISRVHVHEGYLLGPSTILTSSAQRPEYKM------LRPGFVAAAQFNR 410
           LY   SL Q        +   +L G + + T   + P   +      L  GF+A A+ N 
Sbjct: 35  LYRASSLQQRRGGLEYFLLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFLAWAKHNP 94

Query: 409 QALSYVWLSLPH 374
           +    +W  +PH
Sbjct: 95  RGKDALWSLVPH 106


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 169  QHLPIHQAVRATETSDQCAALMGKHTTTSACSTV 270
            QH P HQ   +T    Q   L G     SA S V
Sbjct: 916  QHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVV 949


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,447
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)