Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E03
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    27   4.7  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
 Frame = +3

Query: 444 RRKEHVSKRPAKGQEP*KGRVAGRFSIGSAP----LNEPSQKSTLK-SEVAKTR----QD 596
           RR+  V K P   ++P  GR+    S+   P    LNE  +++ LK ++VAK+     + 
Sbjct: 486 RRRNAVRKDPKLSRQPQVGRLLEENSVDDIPLATMLNEDPREALLKYADVAKSNPMFTKM 545

Query: 597 YKDTXRFPLXAPLXRSPVS 653
           Y +T   P+   +    +S
Sbjct: 546 YSETQPTPIYQGVTEGDIS 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,680
Number of Sequences: 5004
Number of extensions: 47746
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)