Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_E01
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    43   5e-05
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    28   1.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/34 (58%), Positives = 21/34 (61%)
 Frame = +3

Query: 183 CRSCSNRXGLIRKYGLNXCXXCFREXAHDIGFKK 284
           C     R GLIRKYGLN     FRE A+DIGF K
Sbjct: 21  CAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54



 Score = 33.1 bits (72), Expect = 0.050
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 122 MGXAXIWYSHPRRYGXGSR 178
           M    +W+SHPR+YG GSR
Sbjct: 1   MAHENVWFSHPRKYGKGSR 19


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
 Frame = +3

Query: 579 MFQVPGXVWXVFPXLMNRPXPGXRRFAYWXPFXLP---RSXXXXXSVXXXRXXVSPPLXG 749
           +F V   +W  FP   NRP P      ++    LP   RS      +   +  +  PL  
Sbjct: 20  IFAVTFILWNGFPGSSNRPLPSSNDEFHYEDIELPSGYRSEGEVVDLLNPKDELEEPLFS 79

Query: 750 GTXVIPPLSGXPPET 794
              + P  +  P +T
Sbjct: 80  EEPLFPVTTSIPTKT 94


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 729 VSPPLXGGTXVIPPLSGXPPETXCXPXAPPXA 824
           ++PPL  G    PPL   PP     P AP  A
Sbjct: 455 IAPPLPAGMPAAPPL---PPAAPAPPPAPAPA 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,245
Number of Sequences: 5004
Number of extensions: 21285
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)