Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D22
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   114   1e-26
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   113   3e-26
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   1.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    28   2.0  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    27   3.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   8.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  114 bits (275), Expect = 1e-26
 Identities = 51/97 (52%), Positives = 66/97 (68%)
 Frame = +3

Query: 180 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 359
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 360 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSG 470
            RHIY+R  VGV  + K++GG    G+ PSH    SG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSG 97



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +2

Query: 485 RALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 583
           + +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 102 KVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  113 bits (272), Expect = 3e-26
 Identities = 50/97 (51%), Positives = 66/97 (68%)
 Frame = +3

Query: 180 MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 359
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 360 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSG 470
            RHIY+R  VGV  + K++GG    G+ PSH    SG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSG 97



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 17/33 (51%), Positives = 26/33 (78%)
 Frame = +2

Query: 485 RALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 583
           + +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 102 KVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 144 SFIVAVYSVYLMNNHVDKQNYTPCLVLATGRKQILRNSL 28
           SFI  +Y  +  NN +  QN   C+ +  G+K+ LRN L
Sbjct: 106 SFIDPLY--FTKNNILSTQNLLECVRILLGKKEELRNRL 142


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 147 ESFIVAVYSVYLMNNHVDKQNYTPCLVLATGRKQILRNSL 28
           E+ ++  ++VYL+NN V+ Q  T CL     +K ++   L
Sbjct: 838 EAQMLVQFAVYLINNGVEPQKIT-CLTFYAAQKDLIERLL 876


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 201 PLL*RNASCRRKLLFYC*ESFIVAVYSVYLMNNHV--DKQNYTPCLVLATGRKQILRNSL 28
           PL+     C      Y  ++ I+AV+S+Y ++NH+  D  +     + A       RN+L
Sbjct: 129 PLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHLIPDAASLAEDFLAAESEGTCKRNAL 188

Query: 27  VV 22
           +V
Sbjct: 189 IV 190


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
 Frame = -2

Query: 574  KVSSTLCGENATTVLNFLNKLQCLQRLQSPCVQY------------CPDDLQKCEGVTPL 431
            K SS LCGE  +   +F++   C +R    CV              CP  +++  G+ P 
Sbjct: 1351 KNSSCLCGEEFSPRDSFIDCTICERRFHYDCVGLNNEIADSVSKFTCPICMEQSGGIYPW 1410

Query: 430  RLRP 419
            +LRP
Sbjct: 1411 QLRP 1414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,123
Number of Sequences: 5004
Number of extensions: 51188
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)