Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D22
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   130   1e-30
02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849     29   6.6  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   8.7  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   8.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  130 bits (314), Expect = 1e-30
 Identities = 56/93 (60%), Positives = 72/93 (77%)
 Frame = +3

Query: 192 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 371
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 372 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSG 470
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSG 100



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 14/31 (45%), Positives = 24/31 (77%)
 Frame = +2

Query: 491 LQSLEALKLVEKVQDGGRILTTQGRRDLDRI 583
           LQ L+ + +++    GGR++T+QGRRDLD++
Sbjct: 107 LQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137


>02_05_0595 - 30225747-30226589,30227248-30227386,30228734-30228849
          Length = 365

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 345 RCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGQYCTQG 488
           RC  I     ++ P    T TK       N   P HFC+S  +Y T+G
Sbjct: 118 RCGGIPSPEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKG 165


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 423 AHQRSW*QSLLQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 268
           A QR   Q  L  VS     EGWQH++        +  L  E+ ++   AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 299 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 177
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,582
Number of Sequences: 37544
Number of extensions: 345367
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)