Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_D20
(1027 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.005
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.028
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.065
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.26
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.46
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.9
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 3.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.9
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 36.7 bits (81), Expect = 0.005
Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -2
Query: 918 GAGGXGXSXXGXTGGXAXXGG-EGWSXGGRXXGXDGGXWXXGGWRGXFEXXEGG-GGXEA 745
G GG G GG GG G + GG G GG GG RG GG GG +
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
Query: 744 GXXV 733
G V
Sbjct: 70 GAKV 73
Score = 32.7 bits (71), Expect = 0.086
Identities = 22/61 (36%), Positives = 23/61 (37%)
Frame = -2
Query: 912 GGXGXSXXGXTGGXAXXGGEGWSXGGRXXGXDGGXWXXGGWRGXFEXXEGGGGXEAGXXV 733
GG G S G G GG G GGR GG G RG GG G +G
Sbjct: 9 GGRGGSRGGRGG---FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Query: 732 G 730
G
Sbjct: 66 G 66
Score = 31.5 bits (68), Expect = 0.20
Identities = 24/59 (40%), Positives = 25/59 (42%)
Frame = -3
Query: 686 GG*GGXXPGRXXKXGGGQGGXEX*XRRXXIXGEGXDGGXFXGGRGXLGFXXGXGXTXXG 510
GG GG GR GGG+GG R G G GG GGRG G G G G
Sbjct: 16 GGRGGFNGGRGG-FGGGRGGARGGGRGGARGGRGGRGGA-RGGRG--GSSGGRGGAKGG 70
Score = 29.5 bits (63), Expect = 0.80
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = -2
Query: 927 GXXGAGGXGXSXXGXTGGXAXXGGEGWSXGGRXXGXDGGXWXXGGWRGXFEXXEGGG 757
G G G G G G GG G + GGR G GG + E G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHAG 82
Score = 29.1 bits (62), Expect = 1.1
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = -2
Query: 927 GXXGAGGXGXSXXGXTGGXAXXGGEGWSXGGRXXGXDGGXWXXGGWRGXFEXXEGG 760
G G G G G A GG G + GGR G G GG G +GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGR-GGRGGARGGRGGSSGGRGGAKGG 70
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.028
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = -2
Query: 927 GXXGAGGXGXSXXGXTGGXAXXGGEGWSXGGRXXGXDGGXWXXGGWRGXFEXXEGGGGXE 748
G G G G GG GGEG GG G GG G G F GG G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGH-GGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 747 AGXXVG 730
G G
Sbjct: 251 LGGFGG 256
Score = 29.9 bits (64), Expect = 0.61
Identities = 23/60 (38%), Positives = 23/60 (38%)
Frame = -3
Query: 689 GGG*GGXXPGRXXKXGGGQGGXEX*XRRXXIXGEGXDGGXFXGGRGXLGFXXGXGXTXXG 510
GGG GG PG G G G E G G G F GG G GF G G G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEG-HHHGGHGGFGGGPGGFEGGPG--GFGGGPGGFGGG 250
Score = 28.3 bits (60), Expect = 1.9
Identities = 24/64 (37%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = -2
Query: 918 GAGGXGXSXXGXTGGXAXXGGEGWSXG-GRXXGXDGGXWXXGGWRGXFEXXEGGGGXEAG 742
G GG G G G GG G G G G GG GG G FE GG G G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF---GGGPGGFE---GGPGGFGG 242
Query: 741 XXVG 730
G
Sbjct: 243 GPGG 246
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.065
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +2
Query: 776 SNXPRXPPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAPXXP 928
++ P P PPS P LPP PS P A P +P P AP P
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGA--PAAPPLPPSAPIAPPLP 460
Score = 31.9 bits (69), Expect = 0.15
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 785 PRXPPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAPXXP 928
P PP PPS P LP +PP P++P P AP P
Sbjct: 425 PSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 526 PXPXXNPKXPRPPXXXPPSXPSPXXLXLLXXXSXPPCPPPXFXXR 660
P + P PP P + P L S PP PPP R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Score = 29.1 bits (62), Expect = 1.1
Identities = 23/54 (42%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +2
Query: 776 SNXPRXPPXXHXPPSXP*XLP--PXLXPS----PPXXAXPPVSPXXLXPXPPAP 919
S P PP PPS P P P L PS PP A P +P L P PAP
Sbjct: 426 SAPPSLPPSA--PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAP-PLPPAAPAP 476
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +2
Query: 785 PRXPPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAP 919
P PP P P LP + +PP P P P P AP
Sbjct: 444 PAAPPLPPSAPIAP-PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +2
Query: 812 PPSXP*XLPPXLXPSPPXXAXPPVSP---XXLXPXPPAPXXPLXDXS 943
PPS P PP PS A PP+ P + P +P P+ S
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVS 279
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +2
Query: 794 PPXXHXPPSXP*XLPPXLXPSPPXXAXP--PVSPXXLXPXPP-APXXPL 931
PP P P LPP P+ P + P P P + P PP P PL
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPL 206
Score = 29.5 bits (63), Expect = 0.80
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +2
Query: 794 PPXXHXPPSXP*XLPPXLXPSPPXXA--XPPVSPXXLXPXPP-APXXP 928
PP PP P PP +PP + PP P PP AP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 PXPTPXXGXPXSXPKPQXPSPPXKXPTIXP-LPXDXXP 608
P P+ P S P P P+ P K P P LP P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 812 PPSXP*XLPPXLXPSPPXXAXPPVS 886
PPS P LP + P PP PP+S
Sbjct: 184 PPSAP-SLPSAVPPMPPKVPPPPLS 207
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.26
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 776 SNXPRXPPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAP 919
S+ PP H PPS P P P+ P PPV P PP P
Sbjct: 980 SSPTSEPPKDH-PPSAPLSKPVSTSPAAPLARVPPV-PKLSSKAPPVP 1025
Score = 26.6 bits (56), Expect = 5.7
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 776 SNXPRXPPXXHXPP-SXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAP 919
S P P PP P +PP P P A P P P PAP
Sbjct: 1071 SEIPSIPAPSGAPPVPAPSGIPPV--PKPSVAAPPVPKPSVAVPPVPAP 1117
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.46
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 812 PPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAPXXP 928
PP P +PP +PP A PP +P P AP P
Sbjct: 1707 PPPPPMSVPPP-PSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 508 PPXXVXPXPXXNPKXPRPPXXXPPSXPS 591
PP V P P P PP PP P+
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Frame = +2
Query: 785 PRXPPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPP-APXXPLXDXSS 946
P P + P + P PP PP S + PP AP PL S+
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 794 PPXXHXPPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAP 919
PP PP P PP P+ P A PP P P P P
Sbjct: 1709 PPPMSVPP--PPSAPPM--PAGPPSAPPPPLPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +1
Query: 508 PPXXVXPXPXXNPKXPRPPXXXPPSXPSPXXLXLLXXXSXPPCPPP 645
PP + P P P PP P P + PP PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2
Query: 812 PPSXP*XLPPXLXPSPPXXAXPPVSPXXLXPXPPAP 919
PP P + P P+P PP +P P PP P
Sbjct: 733 PPPPPAVIVPT--PAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +3
Query: 435 TPXTQPIPYQXXXVYXVCXRLPXPTPXXGXPXSXPKPQXPSPP 563
TP PIP + P P P G + P P P PP
Sbjct: 743 TPAPAPIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 504 PTPXXGXPXSXPKPQXPSPPXKXPTIXPLPXDXXP 608
P P P P P P P P PLP + P
Sbjct: 113 PVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 912 GGXGXSXXGXTGGXAXXGGEGWSXGGRXXGXDG 814
GG G GG GG G GGR G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -2
Query: 888 GXTGGXAXXGGEGWSXGGRXXGXDG-GXWXXGGWRGXFEXXEGGG 757
G G A GG G GGR G G GG+ G GGG
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 532 PXXNPKXPRPPXXXPPSXPSP 594
P P P PP PPS P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPP 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,524
Number of Sequences: 5004
Number of extensions: 20108
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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