Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D14
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.061
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.061
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 817 PPAXPPPPRPXXXXXPPXPXPPXPXPPXXXPPPXXRPRRP 936
           P +  P P+P     P  P    P  P   PPP   P  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 713 PPPPPXXXXPXXXXPPARGRXPPPXXP 793
           P P      P    PP   + PPP  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 860 PPXPPXXXXPPXPPXXPP 913
           PP P     P  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect(2) = 1.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 696  RXXXPXPPPPP 728
            R   P PPPPP
Sbjct: 1351 RQQQPPPPPPP 1361



 Score = 21.0 bits (42), Expect(2) = 1.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 708  PXPPPPPA 731
            P PPPPP+
Sbjct: 1356 PPPPPPPS 1363


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 862 PPXPXPPXPXPPXXXP 909
           PP P PP P P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 709 PPPPPPXXXXP 741
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 783 GGGXRPRAGGXXXXGXXXXGGGGG 712
           GG     +GG    G    GGGGG
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGG 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.155    0.582 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,550
Number of Sequences: 438
Number of extensions: 6963
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)