Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D12
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.031
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.89 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.89 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = +1

Query: 538 PPPXXGXGXXKKKKXXXPPPXXXXXFXFXPPPPPXXXFXXXXXXPPPPPPPP 693
           PPP              PPP         PPPPP          PPPPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMG---GPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 33.5 bits (73), Expect = 0.041
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +1

Query: 577 KXXXPPPXXXXXFXFXPPPPPXXXFXXXXXXPPPPPPPPXXXXXXXPXXP 726
           K   PPP         P P P          PPPPPPPP       P  P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/55 (34%), Positives = 19/55 (34%)
 Frame = +2

Query: 536 PPPPXGGGGXXKKKXXXXPPPXXXXXXFXLPPPPXXXFFXXXXXXPPPPPPPPXP 700
           PPPP              PPP         PPPP            PPPPPPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV-----AGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +2

Query: 590 PPPXXXXXXFXLPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXXXPP 730
           PPP         P P            PPPPPPPP          PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = +1

Query: 574 KKXXXPPPXXXXXFXFXPPPPPXXXFXXXXXXPPPPPPPPXXXXXXXPXXP 726
           K    PPP          P P           PPPPPPP        P  P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +2

Query: 626 PPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXXXPP 730
           PPPP            P P PPP P        PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 625 PPPPPXXXFXXXXXXPPPPPP 687
           PPPPP   F      PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 33.1 bits (72), Expect = 0.055
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 625 PPPPPXXXFXXXXXXPPPPPPP 690
           PPPPP          PPPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 670 PPPPPPPPXXXXXXXPXXP 726
           PPPPPPPP       P  P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 672 PPPPPPPPXPXXXXXXPP 725
           PPPPPP P P      PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 671 PPPPPPPPXPXXXXXXXXPP 730
           P PPPPPP P        PP
Sbjct: 3   PAPPPPPPAPAPAAAAPAPP 22


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +3

Query: 543 PXXGXGGXXKKKXXXPPPPXXXXFXFXSPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXP 722
           P  G G         PPPP          PP            PPPPPP   P      P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRS-------APPPPPPRSAPSTGRQPP 377

Query: 723 P 725
           P
Sbjct: 378 P 378



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 571 KKKXXXPPPXXXXXFXFXPPPPPXXXFXXXXXXPPPPPPPPXXXXXXXPXXP 726
           KK+   PPP            PP          PPPPPPP        P  P
Sbjct: 308 KKRPPPPPPPSRRNRG----KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
 Frame = +2

Query: 536 PPPPXGGGGXXKKKXXXXPPPXXXXXXFXLPPPPXXXFFXXXXXXP-------PPPPPPP 694
           PPPP        ++    PP         LPPPP           P        PPPPPP
Sbjct: 311 PPPPP----PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366

Query: 695 XPXXXXXXXXPP 730
                     PP
Sbjct: 367 RSAPSTGRQPPP 378


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 619 FXPPPP--PXXXFXXXXXXPPPPPPPP 693
           F PP    P          PPPPPPPP
Sbjct: 171 FQPPSAAAPATSLPSDYNPPPPPPPPP 197



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 672 PPPPPPPP 695
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 675 PPPPPPPXP 701
           PPPPPPP P
Sbjct: 189 PPPPPPPPP 197



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 672 PPPPPPPPXP 701
           PPPPPPP  P
Sbjct: 238 PPPPPPPTLP 247


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +3

Query: 624  SPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXPP 725
            +PPPP           PPPP  PP P      PP
Sbjct: 1706 TPPPPPMSV-------PPPPSAPPMPAGPPSAPP 1732


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 670 PPPPPPPP 693
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 672 PPPPPPPP 695
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 675 PPPPPPPXP 701
           PPPPPPP P
Sbjct: 306 PPPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671  PPPPPPPP 694
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 670 PPPPPPPP 693
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 675 PPPPPPPXP 701
           PPPPPPP P
Sbjct: 945 PPPPPPPPP 953



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 672 PPPPPPPPXP 701
           P PPPPPP P
Sbjct: 905 PTPPPPPPLP 914


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/65 (26%), Positives = 18/65 (27%)
 Frame = +2

Query: 536  PPPPXGGGGXXKKKXXXXPPPXXXXXXFXLPPPPXXXFFXXXXXXPPPPPPPPXPXXXXX 715
            PP P   G     K     PP        +PP P           P   PP P P     
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSS-GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 716  XXXPP 730
               PP
Sbjct: 1209 PVPPP 1213


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 588 PPPPXXXXFXFXSPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXPP 725
           PPPP         PPPP            PPPP    P      PP
Sbjct: 208 PPPPMHHKPGEHMPPPP---MHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 588 PPPPXXXXFXFXSPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXPP 725
           PPPP         PPPP            PPPP    P      PP
Sbjct: 247 PPPPMHHEPGEHMPPPP---MHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 588 PPPPXXXXFXFXSPPPPXXXFFXXXXXXPPPPPPPPXPXXXXXXPP 725
           PPPP         PPPP            PPPP    P      PP
Sbjct: 286 PPPPMHHEPGEHMPPPP---MHHEPGEHMPPPPMHHEPGEHMPPPP 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,662
Number of Sequences: 5004
Number of extensions: 34660
Number of successful extensions: 480
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)