Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D11
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    32   0.12 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.86 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   1.1  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   6.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.0  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   8.0  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   8.0  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 546 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 698
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +PP T
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTT 113



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 558 TSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 698
           T+ + PP T+   ++       +  ++T   P T  N+T T+ PP T
Sbjct: 80  TTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTT 126



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 558 TSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCTKA 704
           T+ + PP T  NST + +     V T  +TV+ P T  NTT T+ PP T A
Sbjct: 105 TTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTT-TVVPPTTHA 152



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 546 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 698
           T+  T+ + PP T+   ++ T        S+T + P T    T T+ PP T
Sbjct: 88  TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTT 138


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 211 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 354
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 700 FVHGGLKVPVVFEGVSGAITVDDTVIT 620
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 178 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 294
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 543 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPPCT 698
           +TTE T+    P T ++  S T  ++  T   T I P+ P N + ++S P T
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAPPT 901


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 531 PRCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 692
           PR W + +FTS+S  P      S I+ +V   ++       + PS +   L PP
Sbjct: 687 PRTWHSPDFTSKSFEPIERKLPSRIS-EVTEDSIDEDKQNEVDPSTSARALPPP 739


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 645 IAPLTPSNTTGTLSPPCTKA 704
           + PL PS+ +G LSPP  KA
Sbjct: 146 VHPLRPSHVSGPLSPPEPKA 165


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 415 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 507
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 314 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 135
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 134 EASAHTARTKA 102
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 620 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--XYNSVMTL 754
           SDDR+  GD+     +  +Y++     +MYE   ++  Y     YN V+ L
Sbjct: 84  SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDVLAL 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,652
Number of Sequences: 5004
Number of extensions: 68334
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)