Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D08
         (1092 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    29   1.5  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 870  TXPPPPXXPHPXXXLSPXXXXPPXFXPXPPXPXXAA 977
            T PPPP    P     P    PP   P PP P  +A
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPS-APPPPLPASSA 1740


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 204

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/83 (24%), Positives = 27/83 (32%)
 Frame = +3

Query: 828  PQXRXXNKTXXRXLTXPPPPXXPHPXXXLSPXXXXPPXFXPXPPXPXXAAAYXXARXSXS 1007
            P+ +   +   R LT PPPP   H      P         P  P    ++A   A    +
Sbjct: 32   PKAKPQWECPVRGLTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSA-APAPAPAA 90

Query: 1008 XXXXXXXXAXAPHPPPXGLXXPP 1076
                    A  P+PP  G    P
Sbjct: 91   SQNRAYGAAPQPYPPQGGYPQQP 113


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 681 PXLTXTTXRXWQKPTPGPAXXXAXXPXXXSXQSALXXVGXXP 806
           P L   + R W+KP P P+   +  P   S  S+   V   P
Sbjct: 24  PELHSLSRRNWKKPPPFPSTNASYAPVIRSCDSSEIMVNSLP 65


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/55 (30%), Positives = 19/55 (34%)
 Frame = +3

Query: 810 LXLXGXPQXRXXNKTXXRXLTXPPPPXXPHPXXXLSPXXXXPPXFXPXPPXPXXA 974
           L   G P+ R   K+       P  P  P P   L P    PP     PP P  A
Sbjct: 104 LFAGGMPKLRHIGKSSASA-APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA 157


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +2

Query: 806 SPXXPGPXSXPXXKQNPXPXS--HXPSXPXXPPPRXXSLXXTSLP 934
           +P  P P S P   + P P S     S P  PPP        +LP
Sbjct: 360 APPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,172
Number of Sequences: 5004
Number of extensions: 17558
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 575740598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)