Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_D08
(1092 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 38 0.017
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 38 0.017
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 35 0.089
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 34 0.20
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.20
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 34 0.20
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 25 1.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.9
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 30 2.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 30 3.3
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 30 3.3
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 29 5.8
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 37.5 bits (83), Expect = 0.017
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = -2
Query: 1091 GXGGXGGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXW---XEXRXXXXX 921
G GG GG GWG GG G + + G+ G G W + +
Sbjct: 210 GQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWG 269
Query: 920 GXEXGXGVGAXWGXRVGEXAGXG 852
G + G G G WG + + G G
Sbjct: 270 GPQQGGG-GGGWGGQGQQQGGWG 291
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 37.5 bits (83), Expect = 0.017
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = -2
Query: 1091 GXGGXGGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXW---XEXRXXXXX 921
G GG GG GWG GG G + + G+ G G W + +
Sbjct: 248 GQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWG 307
Query: 920 GXEXGXGVGAXWGXRVGEXAGXG 852
G + G G G WG + + G G
Sbjct: 308 GPQQGGG-GGGWGGQGQQQGGWG 329
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 35.1 bits (77), Expect = 0.089
Identities = 25/81 (30%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Frame = -2
Query: 1091 GXGGX-GGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXWXEXRXXXXXGX 915
G GG GG A GWG GG G R G G G W G
Sbjct: 134 GWGGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGN 193
Query: 914 EXGXGVGAXWGXRVGEXAGXG 852
+ G G G + GE G G
Sbjct: 194 QGGG--GGRGGNQGGEQGGWG 212
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.9 bits (74), Expect = 0.20
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = -2
Query: 1091 GXGGXGGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXW---XEXRXXXXX 921
G GG GG GWG GG G + + G+ G G W + +
Sbjct: 248 GQGGYGGDY-GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWG 306
Query: 920 GXEXGXGVGAXWGXRVGEXAGXG 852
G + G G G WG + + G G
Sbjct: 307 GPQQGGG-GGGWGGQGQQQGGWG 328
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.20
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = -2
Query: 1091 GXGGXGGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXW---XEXRXXXXX 921
G GG GG GWG GG G + + G+ G G W + +
Sbjct: 210 GQGGYGGDY-GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWG 268
Query: 920 GXEXGXGVGAXWGXRVGEXAGXG 852
G + G G G WG + + G G
Sbjct: 269 GPQQGGG-GGGWGGQGQQQGGWG 290
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.9 bits (74), Expect = 0.20
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = -2
Query: 1091 GXGGXGGXXEAXGWGVGXGGXXGXXXRXRXRXAXXXVGRXXGRXWGXW---XEXRXXXXX 921
G GG GG GWG GG G + + G+ G G W + +
Sbjct: 248 GQGGYGGDY-GGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQGGWG 306
Query: 920 GXEXGXGVGAXWGXRVGEXAGXG 852
G + G G G WG + + G G
Sbjct: 307 GPQQGGG-GGGWGGQGQQQGGWG 328
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 25.0 bits (52), Expect(2) = 1.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 1032 AXAPHPPPXGLXXPPTPXXP 1091
A P PPP GL P P P
Sbjct: 113 APPPPPPPSGLGVAPQPPRP 132
Score = 24.2 bits (50), Expect(2) = 1.7
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Frame = +3
Query: 876 PPPPXX----PHPXXXLSPXXXXPPXFXPXPPXP 965
PPPP P P + PP F PP P
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.7 bits (66), Expect = 1.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 876 PPPPXXPHPXXXLSPXXXXPPXFXPXPP 959
PPPP P P PP F P PP
Sbjct: 33 PPPPMCAPPPLPCPPPPICPPQFCPPPP 60
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 30.3 bits (65), Expect = 2.5
Identities = 22/72 (30%), Positives = 24/72 (33%)
Frame = +3
Query: 876 PPPPXXPHPXXXLSPXXXXPPXFXPXPPXPXXAAAYXXARXSXSXXXXXXXXAXAPHPPP 1055
PPP P P L P PP P PP P + Y + AP PPP
Sbjct: 153 PPPTPIPTPVPILEP----PP---PPPPVPPLSPLYKVLEIPATPSPIF----VAPLPPP 201
Query: 1056 XGLXXPPTPXXP 1091
P P P
Sbjct: 202 PAYTTPDVPPEP 213
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 806 SPXXPGPXSXPXXKQNPXPXSHXPSXPXXPP 898
+P PGP P K NP P P PP
Sbjct: 257 APGKPGPIGPPGPKGNPGPDGQSYQGPPGPP 287
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 806 SPXXPGPXSXPXXKQNPXPXSHXPSXPXXPP 898
+P PGP P K NP P P PP
Sbjct: 257 APGKPGPIGPPGPKGNPGPDGQSYQGPPGPP 287
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = +1
Query: 844 KTKPXPALSPTLXPXXAPTPXPLSXPHXXXXLXSXQXPHXLPXXRP 981
K KP P P L P P P P+ P P +P +P
Sbjct: 117 KHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKP 162
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 29.5 bits (63), Expect = 4.4
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 882 PPXXPHPXXXLSPXXXXPPXFXPXPPXPXXAAA 980
PP P P P PP P PP P AA
Sbjct: 137 PPGPPRPHFPGPPGPHRPPEHYPGPPRPQAPAA 169
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 29.1 bits (62), Expect = 5.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 879 PPPXXPHPXXXLSPXXXXPPXFXPXPP 959
PPP PHP + PP P PP
Sbjct: 549 PPPPPPHPEEEYATPYTVPPGKQPFPP 575
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,393
Number of Sequences: 27780
Number of extensions: 176216
Number of successful extensions: 1034
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2939888878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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