Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    73   5e-14
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   1.1  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.1  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   8.1  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 37/73 (50%), Positives = 43/73 (58%)
 Frame = +1

Query: 370 RHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPDSRKTG 549
           RHVGDLGN+  D     +    D  ISL G + IIGR +V+H   DD G     +S KTG
Sbjct: 80  RHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTG 139

Query: 550 XAGGRVACGVIGI 588
            AG R ACGVIGI
Sbjct: 140 NAGARNACGVIGI 152



 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
 Frame = +3

Query: 147 RAIAVLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCLSTG 317
           RA+AVL  ++ + G +TF QV Q+ +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 318 SHFNPEHKDHG 350
            HFNPE K HG
Sbjct: 63  PHFNPEGKTHG 73


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 358  NDVNRHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIG 477
            ND   H GDLG ++ D          DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 260 FTRRQPSDAPLNVNLPILN 204
           F ++QP+  PL  N+P+LN
Sbjct: 532 FEQQQPTTIPLQPNIPVLN 550


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 126 HGFTTPSRAIAVLST 170
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,035
Number of Sequences: 5004
Number of extensions: 48128
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)