Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_D04
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 95 9e-20
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 92 6e-19
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 89 3e-18
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 68 1e-11
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 45 7e-05
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.098
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 30 2.8
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 4.9
03_06_0343 + 33274329-33274981,33275197-33276121 28 8.5
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 94.7 bits (225), Expect = 9e-20
Identities = 44/78 (56%), Positives = 52/78 (66%)
Frame = +1
Query: 355 PNDVNRHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPD 534
P D RH GDLGNV E + I +VD QI L+GP+ IIGRAVV+H DD G H
Sbjct: 191 PEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHEL 250
Query: 535 SRKTGXAGGRVACGVIGI 588
S+ TG AGGRVACG+IG+
Sbjct: 251 SKTTGNAGGRVACGIIGL 268
Score = 83.4 bits (197), Expect = 2e-16
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Frame = +3
Query: 138 TPSRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST 314
T +A+ VL S+E ++G I F Q DG V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 315 GSHFNPEHKDHGSSE 359
G H+NP K+HG+ E
Sbjct: 178 GPHYNPAGKEHGAPE 192
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 91.9 bits (218), Expect = 6e-19
Identities = 41/78 (52%), Positives = 51/78 (65%)
Frame = +1
Query: 355 PNDVNRHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGXSDHPD 534
P D NRH GDLGN+ + +++ D QI L+G H IIGRAVV+H DD G H
Sbjct: 73 PQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHEL 132
Query: 535 SRKTGXAGGRVACGVIGI 588
S+ TG AGGRVACG+IG+
Sbjct: 133 SKTTGNAGGRVACGIIGL 150
Score = 85.4 bits (202), Expect = 5e-17
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 323
+A+AVL S+E ++G I F+Q DG V G ++GL PG +GFHVH GD + GC+STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 324 FNPEHKDHGSSE 359
FNP K+HG+ +
Sbjct: 63 FNPTGKEHGAPQ 74
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 89.4 bits (212), Expect = 3e-18
Identities = 42/85 (49%), Positives = 53/85 (62%)
Frame = +1
Query: 334 NIRTTXHPNDVNRHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDY 513
N T P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE DD
Sbjct: 116 NNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDL 175
Query: 514 GXSDHPDSRKTGXAGGRVACGVIGI 588
G H S TG AGGR+ACGV+G+
Sbjct: 176 GKGGHELSLSTGNAGGRLACGVVGL 200
Score = 78.2 bits (184), Expect = 8e-15
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +3
Query: 147 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 323
+A+AVL T + G +T TQ G V +TGL PG +GFH+HE GD + GC+STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 324 FNPEHKDHGSSE 359
FNP + HG+ E
Sbjct: 113 FNPNNLTHGAPE 124
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 67.7 bits (158), Expect = 1e-11
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 195 FTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGS 353
F G V+G +TGL PG +GFH+H GD + GC STG HFNP +K HG+
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Score = 67.3 bits (157), Expect = 2e-11
Identities = 31/54 (57%), Positives = 40/54 (74%)
Frame = +1
Query: 355 PNDVNRHVGDLGNVVFDEXHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYG 516
P+D RHVGDLGN+V ++ + I + D QISLSGPH I+GRAVV+H +DD G
Sbjct: 83 PSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLG 136
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 45.2 bits (102), Expect = 7e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 144 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 323
S A+A I G + QV V+ +GL PG++G+ ++E GDL+ G STG
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
Query: 324 FNP 332
+NP
Sbjct: 225 YNP 227
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.098
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 219 VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 317
+ V+ ++GL P +GFHVH G + GC+ G
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 56 SQRENKNAASTHIPGCDRSGDGSSWLHHAVPRHCR 160
S+ KN A+ + G D G SWL +PR R
Sbjct: 249 SRHSVKNGAADQLTGVDEEGHRLSWLTETIPRMLR 283
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 171 LWIERQWRGTAW*SHDEPSP 112
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 79 CFNSH--SWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMGR 219
C SH S++ SLW ++ P+ L P+K+ E FK G+
Sbjct: 226 CVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGK 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,032,400
Number of Sequences: 37544
Number of extensions: 411368
Number of successful extensions: 1111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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