Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_D02
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    69   1e-12
SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    68   1e-12
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  

>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = +3

Query: 120 MPREIXXXKXFLIKAXXXXAXSVKIKXXPEN-VKFXVRCSRFLYTLVITDKEXAEKLKXS 296
           MPR++   K FL  A    A S ++K      VKF +RCSR+LYTLV+ D + AEKL+ S
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 297 LPPGLQVKEV 326
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
 Frame = +3

Query: 120 MPREIXXXKXFLIKAXXXXAXSVKIKXXP-ENVKFXVRCSRFLYTLVITDKEXAEKLKXS 296
           MPR+I   K FL  A    A S +IK    ++VKF +RCS++LYTLV+ D + AEKL+ S
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 297 LPPGLQVKEV 326
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 214 SSSRFDAQGSCTPWSSLTKRXLRNLSXVYLQVSKLKK*SDVTRLK 348
           S S +      TP SS       N   +YL ++ LKK   V RL+
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLR 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,771
Number of Sequences: 5004
Number of extensions: 20273
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)