Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C24
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.24 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   2.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   9.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   10.0 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXP 813
           PPPP      PP PPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXPXPP 822
           PPPP         PPPP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXPXPPXPXXXXXXXPPXXXXXXXXXXXPXXP 900
           PPPP      P   P P P PP         PP           P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXPXPPXPXXXXXXXPPXXXXXXXXXXXPXXP 900
           PPPP       P P P    PP P       PP           P  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
 Frame = +1

Query: 736 PXXXXXXPPPPXXXXXXPPXPPP------PXPXPPXP 828
           P      PP P      PP PPP      P P PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 736 PXXXXXXPPPPXXXXXXPPXPPPPXPXP 819
           P      PPPP         PPPP P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXPXP 819
           PPPP      PP  PPP P P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 757 PPPPXXXXXXPPXPPPPXPXPP 822
           PPPP       P   PP P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 736 PXXXXXXPPPPXXXXXXPPXPPPP 807
           P      PPPP       P PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 21/84 (25%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
 Frame = +1

Query: 607  PXPXXXXXPXXXXXXXXXXPXXPXXXXPXXPXXXXXXXPXXXXPXXXXXXPPPPXXXXXX 786
            P P     P          P       P  P       P    P      PP P      
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV---PAPSSGIPPVPKPAAGV 1188

Query: 787  PPXPPPPXPXP-PXPXXXXXXXPP 855
            PP PPP    P P P       PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 757  PPPPXXXXXXPPXPPPPXPXPPXP 828
            PP P      PP P P    PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVP 1115



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 757  PPPPXXXXXXPPXPPPPXPXPPXP 828
            PP P      PP P P    PP P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVP 1240


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
 Frame = +1

Query: 721  PXXXXPXXXXXXPPPPXXXXXXPPXP---PPPXPXPPXPXXXXXXXPP 855
            P    P       PP       PP P   PPP   PP P       PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = +1

Query: 688  PXXPXXXXXXXPXXXXPXXXXXXPPPPXXXXXXPPXPPPPXPXPP 822
            P  P       P    P       PPP      PP   PP P  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/56 (28%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
 Frame = +1

Query: 664 PXXPXXXXPXXPXXXXXXXPXXXX-PXXXXXXPPPPXXXXXXPPXPPPPXPXPPXP 828
           P  P    P  P       P     P      PP P      PP PP     PP P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 721 PXXXXPXXXXXXPPPPXXXXXXPPXPPPP 807
           P    P      PPPP      PP  PPP
Sbjct: 36  PQWECPVRGLTIPPPPSVDHSAPPSGPPP 64


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 142  QYNNEXLKEXHNGFYFEYSAKMFSVPALND 53
            ++NN        GF F + +KMF+ P+ ND
Sbjct: 1416 RFNNSVPGALGKGFEFGFESKMFTDPSDND 1445


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 10.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 787 PPXPPPPXP 813
           PP PPPP P
Sbjct: 189 PPPPPPPPP 197



 Score = 20.6 bits (41), Expect(2) = 10.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 790 PXPPPPXPXPPXP 828
           P PPPP P P  P
Sbjct: 236 PAPPPP-PPPTLP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,684
Number of Sequences: 5004
Number of extensions: 33002
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)