Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C23
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    61   2e-10
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    29   1.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   8.5  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
 Frame = +3

Query: 168 NKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAA 347
           N +R  ++  T  +KSGHP +   +A    VLF   M++  + P+  + DRFILS GHA 
Sbjct: 15  NTIRTLAVDTTAHAKSGHPGAPMGLAPAAHVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74

Query: 348 PILYAAWAEAGL-FPLDELKNLRKLDSDLEGHP---TPRLNFVDVGTG 479
            + Y      G    +++LK  R++ S   GHP    P LN ++ G G
Sbjct: 75  VLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGHPETHNPDLN-IETGAG 121



 Score = 33.9 bits (74), Expect = 0.032
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
 Frame = +1

Query: 481 PWARGLAVAAGMAYVGKYFDQAPYR----------VYCLVGDGEAAEGSIWESLHFASHY 630
           P  +G+A A G+A +GK    A Y            +C +GDG   EG   E+   A H 
Sbjct: 122 PLGQGIASAVGLA-IGKAHSAAVYNKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGHL 180

Query: 631 KLDXLXRHLRCYRLGQSEPTSLQHQXEVYDARLKASGLNSLVVDGHD 771
           KL  L       ++     TS+    +V + R +A G N + V   D
Sbjct: 181 KLSNLIAVWDNNKITIDGATSMSFDEDV-EKRFEAYGWNIVRVANGD 226


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 496 LAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLD 639
           L  A  ++Y G   D+    V C+VGDGEA  G    S H  +H  LD
Sbjct: 191 LGYALSVSY-GAVLDRPDLIVTCVVGDGEAETGPTATSWH--AHKFLD 235


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 430 WRATPPRDSTSWTSAPAPWARGLAVAA 510
           W A     S+S TS+PAPWA+  + AA
Sbjct: 409 WAAASTSVSSS-TSSPAPWAKPASSAA 434


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 448 RDSTSWTSAPAPWARGLAVAA-GMAYVGKYFDQA 546
           RD+ SW S    W++  A AA G+ + G Y++QA
Sbjct: 369 RDNLSWLSKANNWSKFTATAALGVIHRG-YYNQA 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,614
Number of Sequences: 5004
Number of extensions: 49337
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)