Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_C23
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 54 1e-07
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 54 2e-07
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 29 3.9
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 5.1
03_06_0020 - 31081330-31082219,31083140-31083632 28 9.0
03_06_0017 + 31068648-31069146,31070236-31071125 28 9.0
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 9.0
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 54.4 bits (125), Expect = 1e-07
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Frame = +3
Query: 147 EQLKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFI 326
E ++ N +R ++ + +KSGHP A + VLF +R+ P DRFI
Sbjct: 53 EVVEQSVNTIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFI 112
Query: 327 LSKGHAAPILYAAWAEAGL--FPLDELKNLRKLDSDLEGHP 443
LS GH + YA AG +D+LK R+ S GHP
Sbjct: 113 LSAGHGCMLQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHP 153
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 54.0 bits (124), Expect = 2e-07
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +3
Query: 153 LKDIANKLRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILS 332
L+ N +R +I A + SGHP A + +L+ MRY P + DRFILS
Sbjct: 84 LEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFILS 143
Query: 333 KGHAAPILYAAWAEAGLFPL--DELKNLRKLDSDLEGHP 443
GH + YA AG + ++LK R+ S GHP
Sbjct: 144 AGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPGHP 182
Score = 32.3 bits (70), Expect = 0.55
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Frame = +1
Query: 481 PWARGLAVAAGMAYVGKYF---------DQAPYRVYCLVGDGEAAEGSIWESLHFASHYK 633
P +G+A A G+A K+ + + YC++GDG EG E+ A H+
Sbjct: 196 PLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWG 255
Query: 634 LDXLXRHLRCYRLGQSEPTSLQHQXEVYDARLKASGLNSL-VVDGHD 771
L L + T + +V AR +A G +++ V +G+D
Sbjct: 256 LGKLIAFYDDNHISIDGDTEIAFTEDV-SARFEALGWHTIWVKNGND 301
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 29.5 bits (63), Expect = 3.9
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Frame = +1
Query: 460 SWTSAPAPWARGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLD 639
++ + +P A L A G AY K D+ GDG +EG +L+FA+ +
Sbjct: 269 NYFTVSSPIATQLPHAVGAAYSLK-MDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAP 327
Query: 640 XLXRHLRCYRLGQSEPTSLQHQXEVYD-------------ARLKASGLNSLVVDGHDVTX 780
+ R S PTS Q + ++Y+ R +A G+ S+ VDG+D
Sbjct: 328 VIF-FCRNNGWAISTPTSEQFRSDLYNNLNSTAIAGDGAVIRGQAYGMRSIRVDGNDALA 386
Query: 781 LVXAFDXA 804
+ A A
Sbjct: 387 VYSAVHTA 394
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 436 ATPPRDSTSWTSAPAPW 486
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>03_06_0020 - 31081330-31082219,31083140-31083632
Length = 460
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 478 APWARGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAE 591
A W GLAVAAG D+ +V +VGDGE E
Sbjct: 391 AVWRTGLAVAAGEEDGVVTRDEVRSKVEQVVGDGEIRE 428
>03_06_0017 + 31068648-31069146,31070236-31071125
Length = 462
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +1
Query: 478 APWARGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAE 591
A W GLAVAAG D+ +V +VGDGE E
Sbjct: 393 AVWRTGLAVAAGEEDGVVTRDEVRSKVEQVVGDGEIRE 430
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 222 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 377
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,382
Number of Sequences: 37544
Number of extensions: 394740
Number of successful extensions: 1259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -