Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C22
         (1121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   6.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/60 (28%), Positives = 17/60 (28%)
 Frame = +3

Query: 615 PPXPXXPXPNTNXXXRLPLSXTXXXPPTQXRXXPXXXXFPPPHPXRXXTXXPSHXIPPXP 794
           PP P  P  N      LP       PP   R  P     PPP         P    P  P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 899  PRXXWPXXXXXXTPXXSPPXXXPPPKXPPXPXPPXXA 1009
            P+   P      TP   P    PPP  PP P  P  A
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730



 Score = 26.2 bits (55), Expect = 8.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 938  PXXSPPXXXPPPKXPPXPXPPXXA 1009
            P  +PP    PP  PP P P   A
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSA 1740


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 938  PXXSPPXXXPPPKXPPXPXPP 1000
            P   PP    PP  PP P PP
Sbjct: 10   PPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = +2

Query: 938  PXXSPPXXXPPPKXPPXPXPPXXAXXXFPXXTPXXXXXRISSPXXS-XSPPXXXXPSXAR 1114
            P  +PP   P    PP P P   A    P   P      +S+P  S  SP     PS   
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAP---PVPAPSSEAPSVSTPRSSVPSPHSNASPSPTS 1269

Query: 1115 XS 1120
             S
Sbjct: 1270 SS 1271



 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +2

Query: 947  SPPXXXPPPKXPPXPXPPXXAXXXFPXXTPXXXXXRISSPXXSXSPPXXXXPS 1105
            +PP   P    PP P P        P  TP       SS     +PP    PS
Sbjct: 1021 APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPK---SSSGAPSAPPPVPAPS 1070


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
 Frame = -2

Query: 793 GXGGMXWEGXXVXXRXGWGGGKXXXXGXXRXWVGGXXXV--XLSGRRXXXLVFGXGXXGX 620
           G GG   EG       G+GGG     G    + GG       L G       FG G  G 
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268

Query: 619 GG 614
           GG
Sbjct: 269 GG 270


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 567 PXXSXXPPPPXHHXXXPPXPXXPXPNTNXXXRLPLS 674
           P     P P       PP P  P P TN     PLS
Sbjct: 123 PPLPDEPVPEEPLPGEPPLPNEPVPETNCHKESPLS 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,367
Number of Sequences: 5004
Number of extensions: 18123
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 595662418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)