Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C14
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 409 FSXGGKXPPPPXXGXXXWGGGXPWXXKNXGXGGFXGG 299
           F  G   PPP   G   +GG       + G GGF GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 809 PPPPXPXXXXXXXXXXXXPPPXXPXXXPPPPP 904
           PPPP              PPP      PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +2

Query: 809 PPPPXPXXXXXXXXXXXXP-PPXXPXXX---PPPPPXG 910
           PPPP P            P PP  P      PPPPP G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 810 PPPPPPXXXXXXXXXXXPPPXXP 878
           PPPPPP           PPP  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 798 GXXXPPPPPPXXXXXXXXXXXPPP 869
           G   PPPPPP           PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 780 PXXGXGGXXXPPPPPP 827
           P  G  G   PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +3

Query: 714 PXPPXXXXXXXXXXXXXXXXXXPXXGXGGXXXPPPPPPXXXXXXXXXXXPPP 869
           P PP                  P    GG   PPPPP            PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 798 GXXXPPPPPPXXXXXXXXXXXPPP 869
           G   PPPPPP           PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 809 PPPPXPXXXXXXXXXXXXPPPXXPXXXPPPPPXGA 913
           PPPP P             PP      PPPPP  A
Sbjct: 337 PPPPPPPRSNAAGSIPL--PPQGRSAPPPPPPRSA 369


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +3

Query: 813  PPPPPXXXXXXXXXXXPPPXXPXXXXPPXPXXG 911
            PPPP            PPP  P    P  P  G
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,843
Number of Sequences: 5004
Number of extensions: 23945
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)