Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C13
         (1016 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +1

Query: 838 PXHIXSAPSRHIXAPTRLRLPHXLXXCSHXPSSPALPXXXXLQ 966
           P H  S P  H   P  +++ H      H P +P       LQ
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGPQVETILQ 482


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 739 GXKXGGGGGGXXXAXG 692
           G   GGGGGG   A G
Sbjct: 42  GANNGGGGGGLGIASG 57


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 700  PXXPPPPPR 726
            P  PPPPPR
Sbjct: 1857 PEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,387
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33862920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)