Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C11
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 18/53 (33%), Positives = 18/53 (33%)
 Frame = +3

Query: 774 PPPXXAXXRPPPXRXXPXXPXAGPPGXXPPXRXAXXRXXXXXXXXAPXPPPXP 932
           PPP      PPP    P    AGPP   PP   A           AP   P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP-PPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
 Frame = +3

Query: 774 PPPXXAXXRPPPXRXXPXXPXA----GPPGXXPPXRXAXXRXXXXXXXXAPXPPPXPXAG 941
           PPP       P     P  P A    GPP   PP   A            P PPP   AG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA-----GAGPPPPPPPPPAVSAG 788

Query: 942 GA 947
           G+
Sbjct: 789 GS 790



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 421 GDPPXXPXXXGGAXKXPPPPXGP 353
           G PP  P   G A   PPPP  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 415 PPXXPXXXGGAXKXPPPPXGP 353
           PP  P    GA   PPPP  P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 774  PPPXXAXXRPPPXRXXPXXPXAGPPGXXPP 863
            PP   A   PPP    P  P A P    PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,369
Number of Sequences: 5004
Number of extensions: 16079
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)