Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C10
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.86 
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    28   2.0  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   4.6  

>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 274 PTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIKLRLSSTDTS 122
           P  + P G  P + T  T PV +   NAA   +     PA   RLSS+ +S
Sbjct: 44  PEWLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSS 94


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = -3

Query: 283 HIPPTIIDPSGQLPELRTYSTRPVELFPKNA------AVFEIIDDLEPAIKLRLSSTDTS 122
           HI  T++    QLP+   +   P+EL  + A       +  I+DD +   +L  ++T   
Sbjct: 31  HILGTLVGTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISYIVDDTKVHKQLLENTTKDD 90

Query: 121 NKHIIAKRNTLIGNMLFVANHSKIKSNLK 35
            K  + KR +L  + +  A   + +  ++
Sbjct: 91  VKQCLKKRQSLAYDQMIAAKKKENEKKIE 119


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +2

Query: 68   DKQHVPDQCISFCYDVLVTGVGRGESQFNSWL*IVNNLKHSCIFRE 205
            ++ H+ D  IS  YD+L   V RG++ F  +   +++ +++ ++R+
Sbjct: 1047 ERTHLFDNYISHSYDLLAVFVHRGQASFGHYWTYIHDFENN-VYRK 1091


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 151  KLRLSSTDTSNKHIIAKRNTLIGNMLFVANHSKIKSNLKDSL 26
            KL+L+ST    +    +R +L   ML + N  K  SN+KDSL
Sbjct: 1600 KLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSL 1641


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 380 YILFVFVF*SE*CGNRLHIYVYETITNVLLLFIYFY 487
           ++ F FV  S   GNRL+IY   ++ ++L +   +Y
Sbjct: 535 FVPFAFVTFSITGGNRLYIYAASSVFSILCITALYY 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,566
Number of Sequences: 5004
Number of extensions: 47982
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)