Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C10
         (867 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.         32   3.1  
BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.        32   3.1  
BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2...    32   3.1  
BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease...    32   3.1  
AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease...    32   3.1  
AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.      32   3.1  

>CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 154 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 213

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 214 IFKKKIDEKKRKIIEN 229


>BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 154 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 213

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 214 IFKKKIDEKKRKIIEN 229


>BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2
           homolog (S. cerevisiae) protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 154 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 213

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 214 IFKKKIDEKKRKIIEN 229


>BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease
           protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 154 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 213

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 214 IFKKKIDEKKRKIIEN 229


>AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease
           variant protein.
          Length = 237

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 154 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 213

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 214 IFKKKIDEKKRKIIEN 229


>AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.
          Length = 205

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -3

Query: 304 YL*YFGMHIPPTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIK-LRLSSTD 128
           Y+  F  H+   IID S      R +     E  PK AA    +DD+  +IK L+    +
Sbjct: 122 YMPQFMKHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNN 181

Query: 127 TSNKHIIAKRNTLIGN 80
              K I  K+  +I N
Sbjct: 182 IFKKKIDEKKRKIIEN 197


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,269,719
Number of Sequences: 237096
Number of extensions: 1633386
Number of successful extensions: 6424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6423
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)