Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C06
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    37   0.005
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   8.5  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   8.5  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
 Frame = +1

Query: 25  RSVEALPVLRPXPARVDTLSPIRRCCAKNASASAQVASHSGVDSERANSMTIARVPPMWR 204
           RS+    V+RP P R  T  P+ R    NAS S    S S    +   S  I R     +
Sbjct: 229 RSLGNSSVVRP-PTRTSTTRPLSRVNVTNASGSISKNSTSPSKVKVNASTKIVRPVSAAQ 287

Query: 205 SVRPAAEI--ANAYWSTSSCSKSWTACAPISVGSAALPPGSATKPISHHLQAR 357
           +VRP + I   N+  +T   + S T+ + + V S+      A +P+S + QAR
Sbjct: 288 TVRPGSRIFRENSASNTQRPNVSATSNSTVRVASSL-----AVRPVSRNAQAR 335


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 480 SDVHALRSAFVQVALVESPEESESTNRHSK 391
           SDV   +S   QVAL+E   E E   RH +
Sbjct: 185 SDVAISQSTIQQVALMEEQGEDEQAIRHER 214


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 344 W*LMGLVALPGGSAADPTLIGAQAV 270
           W  MG++ LPG +  + ++IGA AV
Sbjct: 158 WIGMGVIVLPGVTIGEGSVIGAGAV 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,677
Number of Sequences: 5004
Number of extensions: 46132
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)