Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C06
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.72 
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 399 DGSSIQTLPGIQPTPPAQTQIGAHGRLIPDP 491
           D   +   P  QPTPP+ T +G     + DP
Sbjct: 286 DPGEVDLPPETQPTPPSATLVGTTITHLRDP 316


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 310 PPGSATKPISHHLQARRSCVDATAK 384
           PPG+ TK I   LQA     + TAK
Sbjct: 3   PPGALTKKIKVGLQAHVIPAELTAK 27


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 305 RCHPAAPPNPSVTIFKRGDHASMLQPNRH 391
           RCH A  P P V   K  +  +  QP+++
Sbjct: 422 RCHVAGEPLPRVQWLKNDEALNHDQPDKY 450


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 82   SPIRRCCAKNASASAQVASHSGVDSE 159
            +P RRC       SA+  SH G++ E
Sbjct: 1696 APNRRCPPPPRMGSAEGLSHRGMEDE 1721


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,091
Number of Sequences: 438
Number of extensions: 3581
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)