Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_C05
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   168   1e-42
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  168 bits (408), Expect = 1e-42
 Identities = 74/100 (74%), Positives = 92/100 (92%)
 Frame = +1

Query: 217 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 396
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 397 KQTRAGQRTRFKAFVAIGDNXGHIGLGVKCSKEVATAIRG 516
           KQTRAGQRTRFKAFV IGD+ GH+GLG+KC+KEVATAIRG
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRG 126



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 548 PVRRGXWGXXIGKPXXVPCKVXGQCGSVTV 637
           P+RRG WG  +G P  VP KV G+CGSVTV
Sbjct: 137 PIRRGYWGTALGDPHTVPVKVSGKCGSVTV 166


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 214 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 89
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,479
Number of Sequences: 5004
Number of extensions: 50297
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)