Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_C05
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 155 3e-38
07_01_0756 + 5819367-5820038,5820847-5821005 153 2e-37
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 45 9e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 32 0.52
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.9
03_05_0083 - 20616432-20616469,20616666-20617119 29 4.9
11_01_0385 + 2915532-2916482 29 6.5
08_01_0312 + 2764744-2767390,2767632-2767990 29 6.5
02_01_0586 - 4334896-4335177,4336340-4338007 29 6.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 155 bits (377), Expect = 3e-38
Identities = 69/100 (69%), Positives = 87/100 (87%)
Frame = +1
Query: 217 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 396
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQ 96
Query: 397 KQTRAGQRTRFKAFVAIGDNXGHIGLGVKCSKEVATAIRG 516
KQTRAGQRTRFKAFV +GDN GH+GLGVKC+KEVATAIRG
Sbjct: 97 KQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRG 136
Score = 54.0 bits (124), Expect = 2e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2
Query: 548 PVRRGXWGXXIGKPXXVPCKVXGQCGSVTV 637
PVRRG WG IG+P VPCKV G+CGSVTV
Sbjct: 147 PVRRGYWGNKIGQPHTVPCKVTGKCGSVTV 176
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 153 bits (370), Expect = 2e-37
Identities = 69/100 (69%), Positives = 86/100 (86%)
Frame = +1
Query: 217 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 396
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQ
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQ 99
Query: 397 KQTRAGQRTRFKAFVAIGDNXGHIGLGVKCSKEVATAIRG 516
KQTRAGQRTRFKAFV +GD GH+GLGVKC+KEVATAIRG
Sbjct: 100 KQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRG 139
Score = 55.6 bits (128), Expect = 5e-08
Identities = 23/30 (76%), Positives = 24/30 (80%)
Frame = +2
Query: 548 PVRRGXWGXXIGKPXXVPCKVXGQCGSVTV 637
PVRRG WG IGKP VPCKV G+CGSVTV
Sbjct: 150 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTV 179
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 44.8 bits (101), Expect = 9e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 364 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNXGHIGLGVKCSKEVATAI 510
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAI 219
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 32.3 bits (70), Expect = 0.52
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 436 FVAIGDNXGHIGLGVKCSKEVATAIRG 516
FV +GD HI LGVKC+K AT + G
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSG 26
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 498 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 382
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>03_05_0083 - 20616432-20616469,20616666-20617119
Length = 163
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = -3
Query: 847 HKXREWG*XICFGXRXGXWGXXXNVPKGGQXXPRGEGXSQSXTPAIRXEGXXGNW 683
H+ R W + G R WG KG + RG G + A EG W
Sbjct: 79 HRRRYWEWGLAMGRRGAVWGCRPG--KGKRGVGRGSGEERHRLGAPAEEGEEKRW 131
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +3
Query: 654 PXGYWXCVXAQFPXKPSFRMAGVXDWLXPSPRGFXWPPLGTFXLXPHXPXLXPK 815
P W ++P P F W P P G WPPL F P P+
Sbjct: 189 PTPEWPHPGNKWPPLPPFHPPPTPAW--PHPGGNKWPPLPPFPSHPPPTPAWPQ 240
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/45 (46%), Positives = 24/45 (53%)
Frame = +2
Query: 416 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFXP 550
+ HV LLPLAT T +A +PLP ALLSL S L P
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSLGDP 41
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 799 LXXAQNIXPTPTPXPCGXAXPASLNS 876
L A+ I P P+P P A PA+LN+
Sbjct: 69 LKYAEPISPNPSPSPTSAAAPAALNA 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,499,405
Number of Sequences: 37544
Number of extensions: 396652
Number of successful extensions: 946
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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