Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_C02
(997 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13178-1|AAA86955.1| 404|Drosophila melanogaster RNA binding pr... 31 1.9
M15765-1|AAA70425.1| 365|Drosophila melanogaster unknown protei... 31 1.9
L37083-1|AAC41563.1| 404|Drosophila melanogaster RNA binding pr... 31 1.9
BT004875-1|AAO45231.1| 399|Drosophila melanogaster LD22761p pro... 31 1.9
AE014298-2351|AAN09389.1| 399|Drosophila melanogaster CG3606-PB... 31 1.9
AE014298-2350|AAF48578.2| 399|Drosophila melanogaster CG3606-PA... 31 1.9
X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein. 31 2.5
X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP pro... 31 2.5
X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous ... 31 2.5
X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein. 31 2.5
BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p pro... 31 2.5
AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-P... 31 2.5
AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-P... 31 2.5
AE014298-9|AAX52465.1| 193|Drosophila melanogaster CG13376-PA p... 29 10.0
>U13178-1|AAA86955.1| 404|Drosophila melanogaster RNA binding
protein protein.
Length = 404
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 216 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 250
>M15765-1|AAA70425.1| 365|Drosophila melanogaster unknown protein
protein.
Length = 365
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 178 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 212
>L37083-1|AAC41563.1| 404|Drosophila melanogaster RNA binding
protein protein.
Length = 404
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 216 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 250
>BT004875-1|AAO45231.1| 399|Drosophila melanogaster LD22761p
protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 217 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>AE014298-2351|AAN09389.1| 399|Drosophila melanogaster CG3606-PB,
isoform B protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 217 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>AE014298-2350|AAF48578.2| 399|Drosophila melanogaster CG3606-PA,
isoform A protein.
Length = 399
Score = 31.5 bits (68), Expect = 1.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GG+G R G G GGG R GG
Sbjct: 217 GGGGGGRGGFGGRRGGGGGGGGGGGGGGRFDRGGG 251
>X62636-1|CAA44502.1| 326|Drosophila melanogaster hrp36.1 protein.
Length = 326
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>X59691-1|CAA42212.1| 386|Drosophila melanogaster P11 (hnRNP
protein) protein.
Length = 386
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGTGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>X58183-1|CAA41170.1| 386|Drosophila melanogaster heterogeneous
nuclear ribonucleoproteinprotein.
Length = 386
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGTGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGRGGGGGFGNSGG 252
>X54803-1|CAA38574.1| 386|Drosophila melanogaster Hrb87F protein.
Length = 386
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>BT012315-1|AAS77440.1| 385|Drosophila melanogaster LD32727p
protein.
Length = 385
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>AE014297-1716|AAF54967.1| 385|Drosophila melanogaster CG12749-PA,
isoform A protein.
Length = 385
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>AE014297-1715|AAN13574.1| 325|Drosophila melanogaster CG12749-PB,
isoform B protein.
Length = 325
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GG GGW + G W GG GG
Sbjct: 256 GGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGG 290
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -2
Query: 891 GXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G +W G GGG GG
Sbjct: 222 GGGGWGGQNRQNGGGNWGGAGGGGGFGNSGG 252
>AE014298-9|AAX52465.1| 193|Drosophila melanogaster CG13376-PA
protein.
Length = 193
Score = 29.1 bits (62), Expect = 10.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -2
Query: 903 G*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
G GG GGW G W GGG GG
Sbjct: 69 GGGGGGGGWSSGGGGGGGGWSSGGGGGGWSSGGG 102
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,686,601
Number of Sequences: 53049
Number of extensions: 235641
Number of successful extensions: 1165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5037883938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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