Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_C02
(997 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.73
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 3.9
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 3.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 5.2
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.2
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 5.2
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.2
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 5.2
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 6.8
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.73
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 891 GXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
G GGWG G DW G GGG G
Sbjct: 53 GGGGWGRGGGRGGGDWGGNNGGGGNWGGNG 82
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 906 GG*XGGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
G GG G WG +G W G GGG R GG
Sbjct: 106 GNNNGGGGNWGGGGNNDG-GWGGNNGGGGGGRGGG 139
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +2
Query: 317 PXXXXFXXTPXXXXGPPXXPPPXXQXXP-XGXXXXPXXXXPPXGGRG 454
P F P PP PPP P G P PP G G
Sbjct: 615 PPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 661
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +2
Query: 317 PXXXXFXXTPXXXXGPPXXPPPXXQXXP-XGXXXXPXXXXPPXGGRG 454
P F P PP PPP P G P PP G G
Sbjct: 441 PPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAG 487
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 894 GGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GGWG +G G GGG GG
Sbjct: 266 GGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 296
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 894 GGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GGWG +G G GGG GG
Sbjct: 229 GGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 259
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 894 GGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GGWG +G G GGG GG
Sbjct: 228 GGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 258
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 894 GGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GGWG +G G GGG GG
Sbjct: 267 GGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 297
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 894 GGXGGWGMRXWXEGXDWXGXXGGGXTXRXGG 802
GG GGWG +G G GGG GG
Sbjct: 266 GGQGGWGGPQQQQGGGGWGQQGGGGQGGWGG 296
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -2
Query: 903 G*XGGXGGWG-MRXWXEGXDWXGXXGGGXTXRXGG 802
G GG GGWG + W G GGG GG
Sbjct: 162 GGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGG 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,495,920
Number of Sequences: 27780
Number of extensions: 96594
Number of successful extensions: 471
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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