Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B23
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.72 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 34/141 (24%), Positives = 47/141 (33%), Gaps = 9/141 (6%)
 Frame = +3

Query: 495  TVKRPRCWRFSIGSAPLNEPSQKSTL-KSEVAKPXTTIXIPGXSPWXAPLVRSPV----- 656
            +V  P   + S+   P+  PS    + K  VA P   +   G  P   P V +P      
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP-SGAPPVPKPSVAAPPVPAPS 1156

Query: 657  -SDPAPLPXYLSRPFX-PSGNXWPLXXXXXXRXXIPXXX-CXXXPPPXXGLXCTXPPXXX 827
             + P P P   + P   PS    P+         +P        P P  G+    PP   
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216

Query: 828  PXPPXPPXXGXPNPXSXSXXP 890
            P  P P     P P   +  P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAP 1237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
           PPP   +  T  P   P PP  P  G P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 524 FHRLRPPERAITKIDAQVRGGETXHDYKXT 613
           F+  RPP R + K  + ++GGE   D++ T
Sbjct: 368 FYNTRPPYRKLEKQPSYIKGGE-IRDFQLT 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,681
Number of Sequences: 5004
Number of extensions: 47571
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)