Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_B23
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 34 0.17
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 6.3
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 29 6.3
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 29 6.3
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 8.4
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.17
Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 8/125 (6%)
Frame = +3
Query: 540 PLNEPSQKSTLKSEVAKPXTTIXIPGXSPWXAPLVRSPVSDPAPLPXY-LSRPFXPSG-- 710
P P + + + A+P T P +P+ V +P PAP P + + P P
Sbjct: 28 PPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASY 87
Query: 711 --NXWPL---XXXXXXRXXIPXXXCXXXPPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXS 875
N P+ + +P P P + P P PP PP P P
Sbjct: 88 PQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPH 147
Query: 876 XSXXP 890
P
Sbjct: 148 YPPPP 152
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 753 IPXXXCXXXPPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
+P C PPP C PP P PP P P P
Sbjct: 49 MPMPVC-PPPPPCPAQFCPPPPICPPPPPPPMPCPPPPP 86
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +3
Query: 657 SDPAPLPXYLSRPFXPSGNXWP---LXXXXXXRXXIPXXXCXXXPPPXXGLXCTXPPXXX 827
S P P P S P SG+ P R P PPP PP
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 295
Query: 828 PXPPXPPXXGXP 863
PP PP G P
Sbjct: 296 SPPPPPPPRGSP 307
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +3
Query: 756 PXXXCXXXPPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
P PPP G + PP PP PP G P P P
Sbjct: 257 PPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +3
Query: 657 SDPAPLPXYLSRPFXPSGNXWP---LXXXXXXRXXIPXXXCXXXPPPXXGLXCTXPPXXX 827
S P P P S P SG+ P R P PPP PP
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 316
Query: 828 PXPPXPPXXGXP 863
PP PP G P
Sbjct: 317 SPPPPPPPRGSP 328
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +3
Query: 756 PXXXCXXXPPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
P PPP G + PP PP PP G P P P
Sbjct: 278 PPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/72 (30%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Frame = +3
Query: 657 SDPAPLPXYLSRPFXPSGNXWP---LXXXXXXRXXIPXXXCXXXPPPXXGLXCTXPPXXX 827
S P P P S P SG+ P R P PPP PP
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAG 301
Query: 828 PXPPXPPXXGXP 863
PP PP G P
Sbjct: 302 SPPPPPPPRGSP 313
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +3
Query: 756 PXXXCXXXPPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
P PPP G + PP PP PP G P P P
Sbjct: 263 PPPAAGSPPPPRTG---SPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
PPP GL P P PP PP G P P
Sbjct: 745 PPPPGGLP---PISGGPPPPPPPPGGCPPP 771
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
PPP GL PP PP PP G P P S P
Sbjct: 729 PPPPGGL----PPITGGPPPPPPPGGLP-PISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
PPP GL P P PP PP G P P
Sbjct: 745 PPPPGGLP---PISGGPPPPPPPPGGCPPP 771
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
PPP GL PP PP PP G P P S P
Sbjct: 729 PPPPGGL----PPITGGPPPPPPPGGLP-PISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
PPP GL P P PP PP G P P
Sbjct: 328 PPPPGGLP---PISGGPPPPPPPPGGCPPP 354
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNPXSXSXXP 890
PPP GL PP PP PP G P P S P
Sbjct: 312 PPPPGGL----PPITGGPPPPPPPGGLP-PISGGPPP 343
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
PP C PP P PP PP P P
Sbjct: 48 PPICPPQFCPPPPMCPPPPPPPPPPMCPPP 77
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 868 GLGXPXXGGXGGXGXKXGGXVXXRPXXGGG 779
GLG P GG G G GG P GGG
Sbjct: 44 GLGGPGIGGPGLGGPGIGGPGLGGPGVGGG 73
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 868 GLGXPXXGGXGGXGXKXGGXVXXRPXXGGG 779
GLG P GG G G GG P GGG
Sbjct: 44 GLGGPGIGGPGLGGPGIGGPGLGGPGVGGG 73
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 780 PPPXXGLXCTXPPXXXPXPPXPPXXGXPNP 869
PPP G C PP P PP G P P
Sbjct: 1574 PPPRGGSHCQGPPPLMGGP--PPRLGMPPP 1601
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,490
Number of Sequences: 27780
Number of extensions: 313729
Number of successful extensions: 1139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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