Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B21
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       32   0.65 
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    28   8.0  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +3

Query: 279 PKPXEGKXXGXXXXXKXXPKGXXXPPPLXGXPPPXXFXXXPPXP 410
           P P   K           PK    PPP  G PPP      PP P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPP 357



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 333 PKGXXXPPPLXG--XPPPXXFXXXPPXPXKXKKK 428
           PKG   PPP  G   PPP      PP P    KK
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 371 PPPFXFXXPPPPPXKXK 421
           PPPF    PPPPP + K
Sbjct: 360 PPPFAPTLPPPPPPRRK 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.146    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,508,534
Number of Sequences: 37544
Number of extensions: 201113
Number of successful extensions: 1055
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)