Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP18_F_B21
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.1
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P G PPP G PPP PP P
Sbjct: 276 PTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 17/49 (34%)
Frame = +3
Query: 279 PKPXEGKXXGXXXXXKXXPKGXXXPPPLXGXPPPXXFXXXPPXPXKXKK 425
P P G P G PP G PPP PP P + ++
Sbjct: 290 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 339 GXXXPPPLXGXPPPXXFXXXPPXP 410
G PPP G PPP PP P
Sbjct: 253 GSPPPPPAAGSPPPPRTGSPPPPP 276
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P PPP G PPP PP P
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPP 284
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P+ PPP G PPP PP P
Sbjct: 267 PRTGSPPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P G PPP G PPP PP P
Sbjct: 297 PTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 17/49 (34%)
Frame = +3
Query: 279 PKPXEGKXXGXXXXXKXXPKGXXXPPPLXGXPPPXXFXXXPPXPXKXKK 425
P P G P G PP G PPP PP P + ++
Sbjct: 311 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 339 GXXXPPPLXGXPPPXXFXXXPPXP 410
G PPP G PPP PP P
Sbjct: 274 GSPPPPPAAGSPPPPRTGSPPPPP 297
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P PPP G PPP PP P
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPP 305
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P+ PPP G PPP PP P
Sbjct: 288 PRTGSPPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P G PPP G PPP PP P
Sbjct: 282 PTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 17/49 (34%)
Frame = +3
Query: 279 PKPXEGKXXGXXXXXKXXPKGXXXPPPLXGXPPPXXFXXXPPXPXKXKK 425
P P G P G PP G PPP PP P + ++
Sbjct: 296 PPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 339 GXXXPPPLXGXPPPXXFXXXPPXP 410
G PPP G PPP PP P
Sbjct: 259 GSPPPPPAAGSPPPPRTGSPPPPP 282
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P PPP G PPP PP P
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPP 290
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 333 PKGXXXPPPLXGXPPPXXFXXXPPXP 410
P+ PPP G PPP PP P
Sbjct: 273 PRTGSPPPPPTGSPPPPPAGGSPPPP 298
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 334 PKGXXPPPPXGXXPPLXFXXXXPP 405
P G PPPP G PP+ F PP
Sbjct: 721 PPGVGPPPPQG-IPPMGFDPNKPP 743
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.146 0.487
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,722,066
Number of Sequences: 27780
Number of extensions: 121738
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -