Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP18_F_B20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    28   1.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   6.1  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   8.1  

>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 578 ESYKRKVVEEIEEMLAKYKLTDAYEELXKIIDLXHS 685
           E  K ++   +++ LAK K  DA + + K IDL H+
Sbjct: 14  EQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT 49


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 505 ITVRECGIDKRLCSSYGSFRIIGINQNS 422
           I+V +  +D+++C+SY S   I + QN+
Sbjct: 341 ISVSQISVDEKICTSYESLPKIQLEQNT 368


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 244 KGFIFKPHR*IHEQNISEMVQRAGPVD-GKRSLIRRLHGRISNEMGDRES 390
           KGF+FK +  +  +  S +   A  ++  K +++  L+    NE G +++
Sbjct: 227 KGFLFKKNNAMQNRTTSNIKSNASAIEKNKETILNALNNSTLNENGHQDT 276


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 561 IFITLPSPTNEKLSKKSRKCSPNIN*QMPTKNXTRLSTXNTLXNAK 698
           + +T P+  N  +S+ S+  SPN+   MP    TR    ++L   K
Sbjct: 382 LVVTHPNKKNTSVSQ-SQPASPNLRFNMPAPLATRFLQEHSLNGTK 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,125
Number of Sequences: 5004
Number of extensions: 60362
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)